updated the two DNA "twist_motor" examples

jewettaij · Jun 24, 2020 · 6222c4c · 6222c4c
1 parent 51a5835
commit 6222c4c
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/...DNA_only/2strands/3bp_2particles/twist_motor_supercoiling/STEP_2_generate_LAMMPS_files.sh b/...DNA_only/2strands/3bp_2particles/twist_motor_supercoiling/STEP_2_generate_LAMMPS_files.sh
@@ -26,7 +26,7 @@ cd moltemplate_files
                 -inherits 'DNAForceField'  \
                 -monomer-name 'DNAMonomer' \
                 -header 'import "dna_monomer.lt"' \
-                -padding 20,20,20 \
+                -padding 20,20,60 \
                 < init_crds_polymer_backbone.raw > dna_polymer.lt
 
 

diff --git a/...ble_Kratky-Porod/42bp_3particles/twist_motor_supercoiling/STEP_2_generate_LAMMPS_files.sh b/...ble_Kratky-Porod/42bp_3particles/twist_motor_supercoiling/STEP_2_generate_LAMMPS_files.sh
@@ -39,7 +39,7 @@ cd moltemplate_files
       -inherits 'DNAForceField'  \
       -monomer-name 'DNAMonomer' \
       -header 'import "dna_monomer.lt"' \
-      -padding 30,30,30 \
+      -padding 30,30,110 \
       < init_crds_polymer_backbone.raw > dna_polymer.lt
 
   # (Note: The "-helix" parameter represents the twist-per-monomer (Δφ) at the