Fern Transcriptomes

Code and data for the paper:

"Phylotranscriptomics illuminates the placement of whole genome duplications and gene retention in ferns " by Jessie A. Pelosi, Emily H. Kim, W. Brad Barbazuk, and Emily B. Sessa. The publication can be found here.

Code Written By: Jessie Pelosi and Emily Kim

Last Updated: July 18, 2022

This repository is split into the following folders with corresponding markdowns:

1. Assembly and Annotation (Markdown)

2. Phylotranscriptomics (Markdown)

3. Repeats (Markdown)

4. Whole Genome Dups (Markdown)

5. Data

Each folder contains a markdown file for analyses and any relevant scripts/files for those analyses.

All data are provided in the Data folder.