excluding missing phenotypes in the cross-validation and only adding … #121
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: 🌱 | |
| on: | |
| push: | |
| branches: "main" | |
| pull_request: | |
| branches: "main" | |
| jobs: | |
| build: | |
| runs-on: "ubuntu-latest" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: "4.3.1" | |
| - name: Install R::devtools dependencies on Ubuntu | |
| run: | | |
| sudo apt install -y libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev | |
| - name: Install dependencies on R | |
| run: | | |
| install.packages(c("devtools", "testthat", "vcfR", "doParallel", "foreach", "txtplot", "glmnet", "BGLR", "sommer")) | |
| shell: Rscript {0} | |
| - name: Install simquantgen | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| devtools::install_github("jeffersonfparil/simquantgen") | |
| shell: Rscript {0} | |
| - name: Test | |
| run: | | |
| devtools::check() | |
| shell: Rscript {0} |