adding input validation for phenotype data in geno+pheno merge #85
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| name: 🌱 | |
| on: | |
| push: | |
| branches: "main" | |
| pull_request: | |
| branches: "main" | |
| jobs: | |
| build: | |
| runs-on: "ubuntu-latest" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: "4.3.1" | |
| - name: Install R::devtools dependencies on Ubuntu | |
| run: | | |
| sudo apt install -y libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev | |
| - name: Install dependencies on R | |
| run: | | |
| install.packages(c("devtools", "testthat", "vcfR", "doParallel", "foreach", "txtplot", "glmnet", "BGLR", "sommer")) | |
| shell: Rscript {0} | |
| - name: Install simquantgen | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| devtools::install_github("jeffersonfparil/simquantgen") | |
| shell: Rscript {0} | |
| - name: Test | |
| run: | | |
| devtools::check() | |
| shell: Rscript {0} |