Pinned Loading

1. MGPrimerEval MGPrimerEval Public

   This is a snakemake pipeline that determines primer mismatches to SSU rRNA in metagenomic data.

   Jupyter Notebook 3

2. eASV-pipeline-for-515Y-926R eASV-pipeline-for-515Y-926R Public

   This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools

   Shell 29 8

3. simonscmap/c-microbial-map simonscmap/c-microbial-map Public

   Code to plot BLAST hits from Simons Foundation CMAP database with R Oce package

   Python

4. OTUandMetadata2CMAP OTUandMetadata2CMAP Public

   A python script for converting a traditional OTU/eASV table and associated metadata into a format that can be ingested and queried easily by the Simons Foundation CMAP database.

   Shell

5. demux-notes demux-notes Public

   Notes on demultiplexing 515Y reads with cutadapt

   Python 1