type fix for cnnectome_net_config (#250)

fixed incorrect type for kernel_size_down and kernel_size_up in cnnectome_net_config
janelia-cellmap · May 3, 2024 · d168877 · d168877
2 parents b194cbc + 7be30d3
commit d168877
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Showing 9 changed files with 10 additions and 10 deletions.
diff --git a/dacapo/experiments/architectures/cnnectome_unet_config.py b/dacapo/experiments/architectures/cnnectome_unet_config.py
@@ -84,13 +84,13 @@ class CNNectomeUNetConfig(ArchitectureConfig):
             "help_text": "The factors to downsample the feature maps along each axis per layer."
         }
     )
-    kernel_size_down: Optional[List[Coordinate]] = attr.ib(
+    kernel_size_down: Optional[List[List[Coordinate]]] = attr.ib(
         default=None,
         metadata={
             "help_text": "The size of the convolutional kernels used before downsampling in each layer."
         },
     )
-    kernel_size_up: Optional[List[Coordinate]] = attr.ib(
+    kernel_size_up: Optional[List[List[Coordinate]]] = attr.ib(
         default=None,
         metadata={
             "help_text": "The size of the convolutional kernels used before upsampling in each layer."

diff --git a/examples/distance_task/cosem_example.ipynb b/examples/distance_task/cosem_example.ipynb
@@ -147,7 +147,7 @@
     "    ],\n",
     "    snapshot_interval=10000,\n",
     "    min_masked=0.05,\n",
-    "    clip_raw=True,\n",
+    "    clip_raw=False,\n",
     ")\n",
     "config_store.store_trainer_config(trainer_config)"
    ]

diff --git a/examples/distance_task/cosem_example.py b/examples/distance_task/cosem_example.py
@@ -160,7 +160,7 @@
     ],
     snapshot_interval=10000,
     min_masked=0.05,
-    clip_raw=True,
+    clip_raw=False,
 )
 config_store.store_trainer_config(trainer_config)
 

diff --git a/examples/distance_task/cosem_example_fill_in_the_blank.ipynb b/examples/distance_task/cosem_example_fill_in_the_blank.ipynb
@@ -148,7 +148,7 @@
     "    ],\n",
     "    snapshot_interval=10000,\n",
     "    min_masked=0.05,\n",
-    "    clip_raw=True,\n",
+    "    clip_raw = False,\n",
     ")\n",
     "# Store the trainer\n",
     "config_store....\n"

diff --git a/examples/distance_task/cosem_example_fill_in_the_blank.py b/examples/distance_task/cosem_example_fill_in_the_blank.py
@@ -99,7 +99,7 @@
     ],
     snapshot_interval=10000,
     min_masked=0.05,
-    clip_raw=True,
+    clip_raw=False,
 )
 # Store the trainer
 config_store

diff --git a/examples/distance_task/cosem_finetune_example.ipynb b/examples/distance_task/cosem_finetune_example.ipynb
@@ -147,7 +147,7 @@
     "    ],\n",
     "    snapshot_interval=10000,\n",
     "    min_masked=0.05,\n",
-    "    clip_raw=True,\n",
+    "    clip_raw = False,\n",
     ")\n",
     "config_store.store_trainer_config(trainer_config)"
    ]

diff --git a/examples/distance_task/cosem_finetune_example.py b/examples/distance_task/cosem_finetune_example.py
@@ -160,7 +160,7 @@
     ],
     snapshot_interval=10000,
     min_masked=0.05,
-    clip_raw=True,
+    clip_raw=False,
 )
 config_store.store_trainer_config(trainer_config)
 

diff --git a/examples/distance_task/synthetic_example.ipynb b/examples/distance_task/synthetic_example.ipynb
@@ -430,7 +430,7 @@
     "    ],\n",
     "    snapshot_interval=10000,\n",
     "    min_masked=0.05,\n",
-    "    clip_raw=True,\n",
+    "    clip_raw = False,\n",
     ")\n",
     "# config_store.store_trainer_config(trainer_config)\n"
    ]

diff --git a/examples/distance_task/synthetic_example.py b/examples/distance_task/synthetic_example.py
@@ -321,7 +321,7 @@
     ],
     snapshot_interval=10000,
     min_masked=0.05,
-    clip_raw=True,
+    clip_raw=False,
 )
 # config_store.store_trainer_config(trainer_config)