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actions-user committed Dec 3, 2024
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2 changes: 2 additions & 0 deletions _sources/autoapi/dacapo/blockwise/argmax_worker/index.rst.txt
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Expand Up @@ -42,6 +42,8 @@ Module Contents


.. py:data:: path
:value: '/home/runner/work/dacapo/dacapo/dacapo/blockwise/argmax_worker.py'


.. py:function:: cli(log_level)
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2 changes: 2 additions & 0 deletions _sources/autoapi/dacapo/blockwise/predict_worker/index.rst.txt
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Expand Up @@ -42,6 +42,8 @@ Module Contents


.. py:data:: path
:value: '/home/runner/work/dacapo/dacapo/dacapo/blockwise/predict_worker.py'


.. py:function:: cli(log_level)
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2 changes: 2 additions & 0 deletions _sources/autoapi/dacapo/blockwise/relabel_worker/index.rst.txt
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Expand Up @@ -48,6 +48,8 @@ Module Contents


.. py:data:: path
:value: '/home/runner/work/dacapo/dacapo/dacapo/blockwise/relabel_worker.py'


.. py:function:: start_worker(output_container, output_dataset, tmpdir, return_io_loop=False)
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2 changes: 2 additions & 0 deletions _sources/autoapi/dacapo/blockwise/segment_worker/index.rst.txt
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Expand Up @@ -48,6 +48,8 @@ Module Contents


.. py:data:: path
:value: '/home/runner/work/dacapo/dacapo/dacapo/blockwise/segment_worker.py'


.. py:function:: start_worker(input_container: str | upath.UPath, input_dataset: str, output_container: str | upath.UPath, output_dataset: str, tmpdir: str | upath.UPath, function_path: str | upath.UPath, return_io_loop: bool = False)
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2 changes: 2 additions & 0 deletions _sources/autoapi/dacapo/blockwise/threshold_worker/index.rst.txt
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Expand Up @@ -42,6 +42,8 @@ Module Contents


.. py:data:: path
:value: '/home/runner/work/dacapo/dacapo/dacapo/blockwise/threshold_worker.py'


.. py:function:: cli(log_level)
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16 changes: 16 additions & 0 deletions _sources/autoapi/dacapo/experiments/architectures/cnnectome_unet/index.rst.txt
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Expand Up @@ -458,6 +458,8 @@ Module Contents
.. py:attribute:: num_heads
:value: 1



.. py:attribute:: in_channels
Expand All @@ -470,15 +472,23 @@ Module Contents
.. py:attribute:: use_attention
:value: False



.. py:attribute:: batch_norm
:value: True



.. py:attribute:: kernel_size_down
:value: None



.. py:attribute:: kernel_size_up
:value: None



.. py:attribute:: l_conv
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.. py:attribute:: crop_factor
:value: None



.. py:attribute:: next_conv_kernel_sizes
:value: None



.. py:attribute:: dims
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.. py:attribute:: batch_norm
:value: True



.. py:attribute:: W_g
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30 changes: 30 additions & 0 deletions _sources/autoapi/dacapo/experiments/datasplits/datasplit_generator/index.rst.txt
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Expand Up @@ -481,48 +481,78 @@ Module Contents
.. py:attribute:: targets
:value: None



.. py:attribute:: segmentation_type
:value: 'semantic'



.. py:attribute:: max_gt_downsample
:value: 32



.. py:attribute:: max_gt_upsample
:value: 4



.. py:attribute:: max_raw_training_downsample
:value: 16



.. py:attribute:: max_raw_training_upsample
:value: 2



.. py:attribute:: max_raw_validation_downsample
:value: 8



.. py:attribute:: max_raw_validation_upsample
:value: 2



.. py:attribute:: min_training_volume_size
:value: 8000



.. py:attribute:: raw_min
:value: 0



.. py:attribute:: raw_max
:value: 255



.. py:attribute:: classes_separator_character
:value: '&'



.. py:attribute:: use_negative_class
:value: False



.. py:attribute:: max_validation_volume_size
:value: None



.. py:attribute:: binarize_gt
:value: False



.. py:property:: class_name
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30 changes: 30 additions & 0 deletions _sources/autoapi/dacapo/experiments/datasplits/index.rst.txt
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Expand Up @@ -463,48 +463,78 @@ Package Contents
.. py:attribute:: targets
:value: None



.. py:attribute:: segmentation_type
:value: 'semantic'



.. py:attribute:: max_gt_downsample
:value: 32



.. py:attribute:: max_gt_upsample
:value: 4



.. py:attribute:: max_raw_training_downsample
:value: 16



.. py:attribute:: max_raw_training_upsample
:value: 2



.. py:attribute:: max_raw_validation_downsample
:value: 8



.. py:attribute:: max_raw_validation_upsample
:value: 2



.. py:attribute:: min_training_volume_size
:value: 8000



.. py:attribute:: raw_min
:value: 0



.. py:attribute:: raw_max
:value: 255



.. py:attribute:: classes_separator_character
:value: '&'



.. py:attribute:: use_negative_class
:value: False



.. py:attribute:: max_validation_volume_size
:value: None



.. py:attribute:: binarize_gt
:value: False



.. py:property:: class_name
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2 changes: 2 additions & 0 deletions _sources/autoapi/dacapo/experiments/index.rst.txt
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Expand Up @@ -149,6 +149,8 @@ Package Contents
.. py:attribute:: eval_activation
:value: None
.. py:method:: forward(x)
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2 changes: 2 additions & 0 deletions _sources/autoapi/dacapo/experiments/model/index.rst.txt
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Expand Up @@ -123,6 +123,8 @@ Module Contents
.. py:attribute:: eval_activation
:value: None
.. py:method:: forward(x)
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2 changes: 2 additions & 0 deletions _sources/autoapi/dacapo/experiments/starts/cosem_start/index.rst.txt
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Expand Up @@ -125,6 +125,8 @@ Module Contents
.. py:attribute:: name
:value: 'Uninferable/Uninferable'



.. py:attribute:: channels
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2 changes: 2 additions & 0 deletions _sources/autoapi/dacapo/experiments/starts/index.rst.txt
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Expand Up @@ -206,6 +206,8 @@ Package Contents
.. py:attribute:: name
:value: 'Uninferable/Uninferable'



.. py:attribute:: channels
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6 changes: 6 additions & 0 deletions ...dacapo/experiments/tasks/evaluators/binary_segmentation_evaluator/index.rst.txt
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Expand Up @@ -1081,12 +1081,18 @@ Module Contents
.. py:attribute:: sampling
:value: (1, 1, 1)



.. py:attribute:: clip_distance
:value: 200



.. py:attribute:: tol_distance
:value: 40



.. py:method:: test_mask()
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16 changes: 16 additions & 0 deletions .../autoapi/dacapo/experiments/tasks/predictors/affinities_predictor/index.rst.txt
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Expand Up @@ -153,27 +153,43 @@ Module Contents
.. py:attribute:: lsds
:value: True



.. py:attribute:: num_voxels
:value: 20



.. py:attribute:: grow_boundary_iterations
:value: 0



.. py:attribute:: affs_weight_clipmin
:value: 0.05



.. py:attribute:: affs_weight_clipmax
:value: 0.95



.. py:attribute:: lsd_weight_clipmin
:value: 0.05



.. py:attribute:: lsd_weight_clipmax
:value: 0.95



.. py:attribute:: background_as_object
:value: False



.. py:method:: extractor(voxel_size)
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4 changes: 4 additions & 0 deletions ...es/autoapi/dacapo/experiments/tasks/predictors/distance_predictor/index.rst.txt
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Expand Up @@ -144,9 +144,13 @@ Module Contents


.. py:attribute:: clipmin
:value: 0.05



.. py:attribute:: clipmax
:value: 0.95



.. py:property:: embedding_dims
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