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Popular repositories Loading

  1. personalized_community_MDM_screen personalized_community_MDM_screen Public

    Code for "Mapping drug metabolism by the human gut microbiome using personalized microbial communities"

    MATLAB

  2. SeasonalEcosystem SeasonalEcosystem Public

    Forked from AmirErez/SeasonalEcosystem

    Code and data for the article "Nutrient levels and trade-offs control diversity in a model seasonal ecosystem"

    MATLAB

  3. ParasiticPlasmidEcology ParasiticPlasmidEcology Public

    Code for Lopez et al. 2021 "Modeling the ecology of parasitic plasmids"

    MATLAB

  4. NAC NAC Public

    Code repository for "Noisy metabolism can promote microbial cross-feeding"

    MATLAB

  5. gut_phage_quantification gut_phage_quantification Public

    Code repository for Lopez et al. 2024 "Abundance measurements reveal the balance between lysis and lysogeny in the human gut microbiome"

    MATLAB