Skip to content

Commit

Permalink
updates
Browse files Browse the repository at this point in the history
  • Loading branch information
Jack Humphrey authored and Jack Humphrey committed Apr 1, 2024
1 parent 5c02ebe commit a43e119
Show file tree
Hide file tree
Showing 2 changed files with 56 additions and 18 deletions.
17 changes: 14 additions & 3 deletions index.Rmd
View file
Original file line number Diff line number Diff line change
Expand Up @@ -23,26 +23,34 @@ output:
body {
background-color: #f7eec6!important;
}
a:link {
color: green;
background-color: transparent;
text-decoration: none;
}
```

I am a geneticist and computational RNA biologist working to understand neurodegeneration. I study the genetic factors that cause diseases such as amyotrophic lateral sclerosis (ALS), frontotemporal dementia (FTD), and Alzheimer's disease. I develop and apply computational tools to measure gene expression, mRNA splicing, and genetic variation, as well as statistical methods to integrate multiple types of genomic data.

#### Education
| **University College London** | London, UK
| _Ph.D. Clinical Neuroscience_ | September 2014 - February 2019
| Mentors: [Adrian Isaacs](https://ukdri.ac.uk/team/adrian-isaacs), [Pietro Fratta](https://www.frattalab.org/team) & [Vincent Plagnol](https://www.linkedin.com/in/vincent-plagnol-ab8a5b65/?originalSubdomain=uk)
| _MSci Natural Sciences_ | September 2010 - July 2014
| Mentor: [John Wood](https://www.ucl.ac.uk/molecular-nociception-group/)
|
|
#### Experience
| **Icahn School of Medicine at Mount Sinai** | New York City, USA
| _Instructor_ | November 2021 - Present
| _Postdoctoral Fellow_ | February 2019 - November 2021
| Mentor: [Towfique Raj](https://rajlab.org/)
| **Inivata** | Cambridge, UK
| _Computational Scientist_ | January 2018 - March 2018
| **Stanford University** | Palo Alto, USA
| _Visiting Student Researcher_ | February 2017 - May 2017
| _Visiting Student Researcher, [Pritchard Lab](https://web.stanford.edu/group/pritchardlab/home.html)_ | February 2017 - May 2017
| **Justus Liebig University** | Giessen, Germany
| _DAAD RISE Scholar_ | June 2012 - August 2012
| _DAAD RISE Scholar, [Diener Lab](https://www.uni-giessen.de/de/fbz/fb10/institute_klinikum/institute/vphysbio/allgemein/personen-veterinaer-physiologie/martin-diener)_ | June 2012 - August 2012
|
|
#### Skills
Expand All @@ -54,7 +62,10 @@ I am a geneticist and computational RNA biologist working to understand neurodeg

| **Software I wrote/co-wrote:**
| [NYGC ALS Consortium Spinal Cord Browser](https://rstudio-connect.hpc.mssm.edu/als_spinal_cord_browser/)
| [leafcutter](https://davidaknowles.github.io/leafcutter/) | [leafviz](https://github.com/jackhump/leafviz) | [sqtlviztools](https://github.com/jackhump/sqtlviztools) | [cryptex](https://github.com/jackhump/cryptex)
| [leafcutter](https://davidaknowles.github.io/leafcutter/)
| [leafviz](https://github.com/jackhump/leafviz)
| [sqtlviztools](https://github.com/jackhump/sqtlviztools)
| [cryptex](https://github.com/jackhump/cryptex)
|
|
#### Selected Publications
Expand Down
57 changes: 42 additions & 15 deletions index.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -102,6 +102,11 @@ <h1>Jack Humphrey</h1>
body {
background-color: #f7eec6!important;
}
a:link {
color: green;
background-color: transparent;
text-decoration: none;
}
</style>
<p>I am a geneticist and computational RNA biologist working
to understand neurodegeneration. I study the genetic factors
Expand All @@ -117,8 +122,14 @@ <h4>Education</h4>
London</strong> | London, UK<br />
   <em>Ph.D. Clinical Neuroscience</em> | September 2014 -
February 2019<br />
      Mentors: <a href="https://ukdri.ac.uk/team/adrian-isaacs">Adrian
Isaacs</a>, <a href="https://www.frattalab.org/team">Pietro
Fratta</a> &amp; <a href="https://www.linkedin.com/in/vincent-plagnol-ab8a5b65/?originalSubdomain=uk">Vincent
Plagnol</a><br />
   <em>MSci Natural Sciences</em> | September 2010 - July
2014<br />
      Mentor: <a href="https://www.ucl.ac.uk/molecular-nociception-group/">John
Wood</a><br />
<br />
</div>
</div>
Expand All @@ -129,15 +140,18 @@ <h4>Experience</h4>
   <em>Instructor</em> | November 2021 - Present<br />
   <em>Postdoctoral Fellow</em> | February 2019 - November
2021<br />
      Mentor: <a href="https://rajlab.org/">Towfique
Raj</a><br />
<strong>Inivata</strong> | Cambridge, UK<br />
   <em>Computational Scientist</em> | January 2018 - March
2018<br />
<strong>Stanford University</strong> | Palo Alto, USA<br />
   <em>Visiting Student Researcher</em> | February 2017 -
May 2017<br />
   <em>Visiting Student Researcher, <a href="https://web.stanford.edu/group/pritchardlab/home.html">Pritchard
Lab</a></em> | February 2017 - May 2017<br />
<strong>Justus Liebig University</strong> | Giessen,
Germany<br />
  <em>DAAD RISE Scholar</em> | June 2012 - August 2012<br />
  <em>DAAD RISE Scholar, <a href="https://www.uni-giessen.de/de/fbz/fb10/institute_klinikum/institute/vphysbio/allgemein/personen-veterinaer-physiologie/martin-diener">Diener
Lab</a></em> | June 2012 - August 2012<br />
<br />
</div>
</div>
Expand All @@ -154,10 +168,10 @@ <h4>Skills</h4>
wrote/co-wrote:</strong><br />
    <a href="https://rstudio-connect.hpc.mssm.edu/als_spinal_cord_browser/">NYGC
ALS Consortium Spinal Cord Browser</a><br />
    <a href="https://davidaknowles.github.io/leafcutter/">leafcutter</a>
| <a href="https://github.com/jackhump/leafviz">leafviz</a>
| <a href="https://github.com/jackhump/sqtlviztools">sqtlviztools</a>
| <a href="https://github.com/jackhump/cryptex">cryptex</a><br />
    <a href="https://davidaknowles.github.io/leafcutter/">leafcutter</a><br />
    <a href="https://github.com/jackhump/leafviz">leafviz</a><br />
    <a href="https://github.com/jackhump/sqtlviztools">sqtlviztools</a><br />
    <a href="https://github.com/jackhump/cryptex">cryptex</a><br />
<br />
</div>
</div>
Expand Down Expand Up @@ -262,6 +276,11 @@ <h1>Jack Humphrey</h1>
body {
background-color: #f7eec6!important;
}
a:link {
color: green;
background-color: transparent;
text-decoration: none;
}
</style>
<p>I am a geneticist and computational RNA biologist
working to understand neurodegeneration. I study the
Expand All @@ -277,8 +296,14 @@ <h4>Education</h4>
London</strong> | London, UK<br />
   <em>Ph.D. Clinical Neuroscience</em> | September 2014 -
February 2019<br />
      Mentors: <a href="https://ukdri.ac.uk/team/adrian-isaacs">Adrian
Isaacs</a>, <a href="https://www.frattalab.org/team">Pietro Fratta</a>
&amp; <a href="https://www.linkedin.com/in/vincent-plagnol-ab8a5b65/?originalSubdomain=uk">Vincent
Plagnol</a><br />
   <em>MSci Natural Sciences</em> | September 2010 - July
2014<br />
      Mentor: <a href="https://www.ucl.ac.uk/molecular-nociception-group/">John
Wood</a><br />
<br />
</div>
</div>
Expand All @@ -289,17 +314,19 @@ <h4>Experience</h4>
   <em>Instructor</em> | November 2021 - Present<br />
   <em>Postdoctoral Fellow</em> | February 2019 - November
2021<br />
      Mentor: <a href="https://rajlab.org/">Towfique
Raj</a><br />
<strong>Inivata</strong> | Cambridge, UK<br />
   <em>Computational Scientist</em> | January 2018 - March
2018<br />
<strong>Stanford University</strong> | Palo Alto,
USA<br />
   <em>Visiting Student Researcher</em> | February 2017 -
May 2017<br />
   <em>Visiting Student Researcher, <a href="https://web.stanford.edu/group/pritchardlab/home.html">Pritchard
Lab</a></em> | February 2017 - May 2017<br />
<strong>Justus Liebig University</strong> | Giessen,
Germany<br />
  <em>DAAD RISE Scholar</em> | June 2012 - August
2012<br />
  <em>DAAD RISE Scholar, <a href="https://www.uni-giessen.de/de/fbz/fb10/institute_klinikum/institute/vphysbio/allgemein/personen-veterinaer-physiologie/martin-diener">Diener
Lab</a></em> | June 2012 - August 2012<br />
<br />
</div>
</div>
Expand All @@ -316,10 +343,10 @@ <h4>Skills</h4>
wrote/co-wrote:</strong><br />
    <a href="https://rstudio-connect.hpc.mssm.edu/als_spinal_cord_browser/">NYGC
ALS Consortium Spinal Cord Browser</a><br />
    <a href="https://davidaknowles.github.io/leafcutter/">leafcutter</a>
| <a href="https://github.com/jackhump/leafviz">leafviz</a> |
<a href="https://github.com/jackhump/sqtlviztools">sqtlviztools</a>
| <a href="https://github.com/jackhump/cryptex">cryptex</a><br />
    <a href="https://davidaknowles.github.io/leafcutter/">leafcutter</a><br />
    <a href="https://github.com/jackhump/leafviz">leafviz</a><br />
    <a href="https://github.com/jackhump/sqtlviztools">sqtlviztools</a><br />
    <a href="https://github.com/jackhump/cryptex">cryptex</a><br />
<br />
</div>
</div>
Expand Down

0 comments on commit a43e119

Please sign in to comment.