Update some things

.github/workflows/release.yml

@@ -17,6 +17,14 @@ jobs:
             target: x86_64-unknown-linux-gnu
             asset_name: bigtools-linux-gnu
             remote: true
+          - os: windows-msvc-latest
+            target: x86_64-pc-windows-msvc
+            asset_name: bigtools-windows-msvc
+            remote: true
+          - os: macos-latest
+            target: x86_64-apple-darwin
+            asset_name: bigtools-apple-darwin
+            remote: true
     steps:
       - name: Checkout code
         uses: actions/checkout@v2
@@ -30,16 +38,17 @@ jobs:
           files: |
             target/release/bedgraphtobigwig;
             target/release/bedtobigbed;
+            target/release/bigbedinfo;
+            target/release/bigbedtobed;
             target/release/bigtools;
             target/release/bigwigaverageoverbed;
             target/release/bigwiginfo;
             target/release/bigwigmerge;
             target/release/bigwigtobedgraph;
             target/release/bigwigvaluesoverbed
           dest: ${{ matrix.asset_name }}.zip
-      - name: Asset upload
+      - name: Zip upload
         uses: shogo82148/actions-upload-release-asset@v1
         with:
           upload_url: ${{ github.event.release.upload_url }}
           asset_path: ${{ github.workspace }}/${{ matrix.asset_name }}.zip
-

LICENSE

@@ -1,6 +1,6 @@
 MIT License
 
-Copyright (c) 2023 Jack Huey
+Copyright (c) 2024 Jack Huey
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

Dockerfile → bench/Dockerfile

@@ -1,8 +1,10 @@
+# Note: this should be build from the parent directory
+
 FROM rust:buster as build
 
 RUN mkdir /bigtools
-COPY ./src /bigtools/src
-COPY ./Cargo.toml /bigtools
+COPY ./bigtools/src /bigtools/src
+COPY ./bigtools/Cargo.toml /bigtools
 COPY ./Cargo.lock /bigtools
 RUN cd /bigtools && cargo install --path .
 

bench/bench_plots.ipynb

@@ -298,7 +298,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "plotting",
+   "display_name": "Python 3.11.4 ('bigtools')",
    "language": "python",
    "name": "python3"
   },
@@ -312,9 +312,14 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.11"
+   "version": "3.11.4"
   },
-  "orig_nbformat": 4
+  "orig_nbformat": 4,
+  "vscode": {
+   "interpreter": {
+    "hash": "4e8d9598e99a1b5bc615fc1811f6f41b50fc824837143c71885b70d1ca899c99"
+   }
+  }
  },
  "nbformat": 4,
  "nbformat_minor": 2