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PHYSBO Developers committed Jun 4, 2024
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9 changes: 8 additions & 1 deletion manual/develop/en/_modules/physbo/blm/basis/fourier.html
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<div itemprop="articleBody">

<h1>Source code for physbo.blm.basis.fourier</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding:utf-8 -*-</span>
<span></span><span class="c1"># SPDX-License-Identifier: MPL-2.0</span>
<span class="c1"># Copyright (C) 2020- The University of Tokyo</span>
<span class="c1">#</span>
<span class="c1"># This Source Code Form is subject to the terms of the Mozilla Public</span>
<span class="c1"># License, v. 2.0. If a copy of the MPL was not distributed with this</span>
<span class="c1"># file, You can obtain one at https://mozilla.org/MPL/2.0/.</span>

<span class="c1"># -*- coding:utf-8 -*-</span>
<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>


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9 changes: 8 additions & 1 deletion manual/develop/en/_modules/physbo/blm/core/model.html
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<div itemprop="articleBody">

<h1>Source code for physbo.blm.core.model</h1><div class="highlight"><pre>
<span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
<span></span><span class="c1"># SPDX-License-Identifier: MPL-2.0</span>
<span class="c1"># Copyright (C) 2020- The University of Tokyo</span>
<span class="c1">#</span>
<span class="c1"># This Source Code Form is subject to the terms of the Mozilla Public</span>
<span class="c1"># License, v. 2.0. If a copy of the MPL was not distributed with this</span>
<span class="c1"># file, You can obtain one at https://mozilla.org/MPL/2.0/.</span>

<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
<span class="kn">from</span> <span class="nn">..</span> <span class="kn">import</span> <span class="n">inf</span>


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9 changes: 8 additions & 1 deletion manual/develop/en/_modules/physbo/blm/inf/exact.html
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<div itemprop="articleBody">

<h1>Source code for physbo.blm.inf.exact</h1><div class="highlight"><pre>
<span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
<span></span><span class="c1"># SPDX-License-Identifier: MPL-2.0</span>
<span class="c1"># Copyright (C) 2020- The University of Tokyo</span>
<span class="c1">#</span>
<span class="c1"># This Source Code Form is subject to the terms of the Mozilla Public</span>
<span class="c1"># License, v. 2.0. If a copy of the MPL was not distributed with this</span>
<span class="c1"># file, You can obtain one at https://mozilla.org/MPL/2.0/.</span>

<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
<span class="kn">import</span> <span class="nn">scipy</span>

<span class="kn">import</span> <span class="nn">physbo.misc</span> <span class="k">as</span> <span class="nn">misc</span>
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9 changes: 8 additions & 1 deletion manual/develop/en/_modules/physbo/blm/lik/gauss.html
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<div itemprop="articleBody">

<h1>Source code for physbo.blm.lik.gauss</h1><div class="highlight"><pre>
<span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
<span></span><span class="c1"># SPDX-License-Identifier: MPL-2.0</span>
<span class="c1"># Copyright (C) 2020- The University of Tokyo</span>
<span class="c1">#</span>
<span class="c1"># This Source Code Form is subject to the terms of the Mozilla Public</span>
<span class="c1"># License, v. 2.0. If a copy of the MPL was not distributed with this</span>
<span class="c1"># file, You can obtain one at https://mozilla.org/MPL/2.0/.</span>

<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>


<div class="viewcode-block" id="gauss">
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9 changes: 8 additions & 1 deletion manual/develop/en/_modules/physbo/blm/lik/linear.html
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<div itemprop="articleBody">

<h1>Source code for physbo.blm.lik.linear</h1><div class="highlight"><pre>
<span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
<span></span><span class="c1"># SPDX-License-Identifier: MPL-2.0</span>
<span class="c1"># Copyright (C) 2020- The University of Tokyo</span>
<span class="c1">#</span>
<span class="c1"># This Source Code Form is subject to the terms of the Mozilla Public</span>
<span class="c1"># License, v. 2.0. If a copy of the MPL was not distributed with this</span>
<span class="c1"># file, You can obtain one at https://mozilla.org/MPL/2.0/.</span>

<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>


<div class="viewcode-block" id="linear">
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9 changes: 8 additions & 1 deletion manual/develop/en/_modules/physbo/blm/predictor.html
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<div itemprop="articleBody">

<h1>Source code for physbo.blm.predictor</h1><div class="highlight"><pre>
<span></span><span class="kn">import</span> <span class="nn">physbo.predictor</span>
<span></span><span class="c1"># SPDX-License-Identifier: MPL-2.0</span>
<span class="c1"># Copyright (C) 2020- The University of Tokyo</span>
<span class="c1">#</span>
<span class="c1"># This Source Code Form is subject to the terms of the Mozilla Public</span>
<span class="c1"># License, v. 2.0. If a copy of the MPL was not distributed with this</span>
<span class="c1"># file, You can obtain one at https://mozilla.org/MPL/2.0/.</span>

<span class="kn">import</span> <span class="nn">physbo.predictor</span>


<div class="viewcode-block" id="predictor">
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9 changes: 8 additions & 1 deletion manual/develop/en/_modules/physbo/blm/prior/gauss.html
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<div itemprop="articleBody">

<h1>Source code for physbo.blm.prior.gauss</h1><div class="highlight"><pre>
<span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
<span></span><span class="c1"># SPDX-License-Identifier: MPL-2.0</span>
<span class="c1"># Copyright (C) 2020- The University of Tokyo</span>
<span class="c1">#</span>
<span class="c1"># This Source Code Form is subject to the terms of the Mozilla Public</span>
<span class="c1"># License, v. 2.0. If a copy of the MPL was not distributed with this</span>
<span class="c1"># file, You can obtain one at https://mozilla.org/MPL/2.0/.</span>

<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>


<div class="viewcode-block" id="cov_const">
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9 changes: 8 additions & 1 deletion manual/develop/en/_modules/physbo/gp/core/learning.html
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<div itemprop="articleBody">

<h1>Source code for physbo.gp.core.learning</h1><div class="highlight"><pre>
<span></span><span class="c1"># coding=utf-8</span>
<span></span><span class="c1"># SPDX-License-Identifier: MPL-2.0</span>
<span class="c1"># Copyright (C) 2020- The University of Tokyo</span>
<span class="c1">#</span>
<span class="c1"># This Source Code Form is subject to the terms of the Mozilla Public</span>
<span class="c1"># License, v. 2.0. If a copy of the MPL was not distributed with this</span>
<span class="c1"># file, You can obtain one at https://mozilla.org/MPL/2.0/.</span>

<span class="c1"># coding=utf-8</span>
<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
<span class="kn">import</span> <span class="nn">scipy.optimize</span>

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9 changes: 8 additions & 1 deletion manual/develop/en/_modules/physbo/gp/core/model.html
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<div itemprop="articleBody">

<h1>Source code for physbo.gp.core.model</h1><div class="highlight"><pre>
<span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
<span></span><span class="c1"># SPDX-License-Identifier: MPL-2.0</span>
<span class="c1"># Copyright (C) 2020- The University of Tokyo</span>
<span class="c1">#</span>
<span class="c1"># This Source Code Form is subject to the terms of the Mozilla Public</span>
<span class="c1"># License, v. 2.0. If a copy of the MPL was not distributed with this</span>
<span class="c1"># file, You can obtain one at https://mozilla.org/MPL/2.0/.</span>

<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>

<span class="kn">from</span> <span class="nn">physbo</span> <span class="kn">import</span> <span class="n">blm</span>
<span class="kn">from</span> <span class="nn">physbo.gp</span> <span class="kn">import</span> <span class="n">inf</span>
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9 changes: 8 additions & 1 deletion manual/develop/en/_modules/physbo/gp/core/prior.html
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<div itemprop="articleBody">

<h1>Source code for physbo.gp.core.prior</h1><div class="highlight"><pre>
<span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
<span></span><span class="c1"># SPDX-License-Identifier: MPL-2.0</span>
<span class="c1"># Copyright (C) 2020- The University of Tokyo</span>
<span class="c1">#</span>
<span class="c1"># This Source Code Form is subject to the terms of the Mozilla Public</span>
<span class="c1"># License, v. 2.0. If a copy of the MPL was not distributed with this</span>
<span class="c1"># file, You can obtain one at https://mozilla.org/MPL/2.0/.</span>

<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
<span class="kn">import</span> <span class="nn">scipy</span>


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9 changes: 8 additions & 1 deletion manual/develop/en/_modules/physbo/gp/cov/gauss.html
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<div itemprop="articleBody">

<h1>Source code for physbo.gp.cov.gauss</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding:utf-8 -*-</span>
<span></span><span class="c1"># SPDX-License-Identifier: MPL-2.0</span>
<span class="c1"># Copyright (C) 2020- The University of Tokyo</span>
<span class="c1">#</span>
<span class="c1"># This Source Code Form is subject to the terms of the Mozilla Public</span>
<span class="c1"># License, v. 2.0. If a copy of the MPL was not distributed with this</span>
<span class="c1"># file, You can obtain one at https://mozilla.org/MPL/2.0/.</span>

<span class="c1"># -*- coding:utf-8 -*-</span>
<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
<span class="kn">from</span> <span class="nn">scipy</span> <span class="kn">import</span> <span class="n">spatial</span>
<span class="kn">from</span> <span class="nn">._src.enhance_gauss</span> <span class="kn">import</span> <span class="n">grad_width64</span>
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9 changes: 8 additions & 1 deletion manual/develop/en/_modules/physbo/gp/inf/exact.html
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<div itemprop="articleBody">

<h1>Source code for physbo.gp.inf.exact</h1><div class="highlight"><pre>
<span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
<span></span><span class="c1"># SPDX-License-Identifier: MPL-2.0</span>
<span class="c1"># Copyright (C) 2020- The University of Tokyo</span>
<span class="c1">#</span>
<span class="c1"># This Source Code Form is subject to the terms of the Mozilla Public</span>
<span class="c1"># License, v. 2.0. If a copy of the MPL was not distributed with this</span>
<span class="c1"># file, You can obtain one at https://mozilla.org/MPL/2.0/.</span>

<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
<span class="kn">import</span> <span class="nn">scipy</span>
<span class="kn">from</span> <span class="nn">...</span> <span class="kn">import</span> <span class="n">misc</span>
<span class="kn">from</span> <span class="nn">copy</span> <span class="kn">import</span> <span class="n">deepcopy</span>
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8 changes: 7 additions & 1 deletion manual/develop/en/_modules/physbo/gp/lik/gauss.html
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<div itemprop="articleBody">

<h1>Source code for physbo.gp.lik.gauss</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding:utf-8 -*-</span>
<span></span><span class="c1"># SPDX-License-Identifier: MPL-2.0</span>
<span class="c1"># Copyright (C) 2020- The University of Tokyo</span>
<span class="c1">#</span>
<span class="c1"># This Source Code Form is subject to the terms of the Mozilla Public</span>
<span class="c1"># License, v. 2.0. If a copy of the MPL was not distributed with this</span>
<span class="c1"># file, You can obtain one at https://mozilla.org/MPL/2.0/.</span>

<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>


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9 changes: 8 additions & 1 deletion manual/develop/en/_modules/physbo/gp/mean/const.html
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<div itemprop="articleBody">

<h1>Source code for physbo.gp.mean.const</h1><div class="highlight"><pre>
<span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
<span></span><span class="c1"># SPDX-License-Identifier: MPL-2.0</span>
<span class="c1"># Copyright (C) 2020- The University of Tokyo</span>
<span class="c1">#</span>
<span class="c1"># This Source Code Form is subject to the terms of the Mozilla Public</span>
<span class="c1"># License, v. 2.0. If a copy of the MPL was not distributed with this</span>
<span class="c1"># file, You can obtain one at https://mozilla.org/MPL/2.0/.</span>

<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>


<div class="viewcode-block" id="const">
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9 changes: 8 additions & 1 deletion manual/develop/en/_modules/physbo/gp/mean/zero.html
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<div itemprop="articleBody">

<h1>Source code for physbo.gp.mean.zero</h1><div class="highlight"><pre>
<span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
<span></span><span class="c1"># SPDX-License-Identifier: MPL-2.0</span>
<span class="c1"># Copyright (C) 2020- The University of Tokyo</span>
<span class="c1">#</span>
<span class="c1"># This Source Code Form is subject to the terms of the Mozilla Public</span>
<span class="c1"># License, v. 2.0. If a copy of the MPL was not distributed with this</span>
<span class="c1"># file, You can obtain one at https://mozilla.org/MPL/2.0/.</span>

<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>


<div class="viewcode-block" id="zero">
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9 changes: 8 additions & 1 deletion manual/develop/en/_modules/physbo/gp/predictor.html
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<div itemprop="articleBody">

<h1>Source code for physbo.gp.predictor</h1><div class="highlight"><pre>
<span></span><span class="kn">import</span> <span class="nn">physbo.predictor</span>
<span></span><span class="c1"># SPDX-License-Identifier: MPL-2.0</span>
<span class="c1"># Copyright (C) 2020- The University of Tokyo</span>
<span class="c1">#</span>
<span class="c1"># This Source Code Form is subject to the terms of the Mozilla Public</span>
<span class="c1"># License, v. 2.0. If a copy of the MPL was not distributed with this</span>
<span class="c1"># file, You can obtain one at https://mozilla.org/MPL/2.0/.</span>

<span class="kn">import</span> <span class="nn">physbo.predictor</span>


<div class="viewcode-block" id="predictor">
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9 changes: 8 additions & 1 deletion manual/develop/en/_modules/physbo/misc/centering.html
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<div itemprop="articleBody">

<h1>Source code for physbo.misc.centering</h1><div class="highlight"><pre>
<span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
<span></span><span class="c1"># SPDX-License-Identifier: MPL-2.0</span>
<span class="c1"># Copyright (C) 2020- The University of Tokyo</span>
<span class="c1">#</span>
<span class="c1"># This Source Code Form is subject to the terms of the Mozilla Public</span>
<span class="c1"># License, v. 2.0. If a copy of the MPL was not distributed with this</span>
<span class="c1"># file, You can obtain one at https://mozilla.org/MPL/2.0/.</span>

<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>


<div class="viewcode-block" id="centering">
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9 changes: 8 additions & 1 deletion manual/develop/en/_modules/physbo/misc/gauss_elim.html
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<div itemprop="articleBody">

<h1>Source code for physbo.misc.gauss_elim</h1><div class="highlight"><pre>
<span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
<span></span><span class="c1"># SPDX-License-Identifier: MPL-2.0</span>
<span class="c1"># Copyright (C) 2020- The University of Tokyo</span>
<span class="c1">#</span>
<span class="c1"># This Source Code Form is subject to the terms of the Mozilla Public</span>
<span class="c1"># License, v. 2.0. If a copy of the MPL was not distributed with this</span>
<span class="c1"># file, You can obtain one at https://mozilla.org/MPL/2.0/.</span>

<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
<span class="kn">import</span> <span class="nn">scipy</span>


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9 changes: 8 additions & 1 deletion manual/develop/en/_modules/physbo/misc/set_config.html
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<div itemprop="articleBody">

<h1>Source code for physbo.misc.set_config</h1><div class="highlight"><pre>
<span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
<span></span><span class="c1"># SPDX-License-Identifier: MPL-2.0</span>
<span class="c1"># Copyright (C) 2020- The University of Tokyo</span>
<span class="c1">#</span>
<span class="c1"># This Source Code Form is subject to the terms of the Mozilla Public</span>
<span class="c1"># License, v. 2.0. If a copy of the MPL was not distributed with this</span>
<span class="c1"># file, You can obtain one at https://mozilla.org/MPL/2.0/.</span>

<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
<span class="kn">import</span> <span class="nn">configparser</span>


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9 changes: 8 additions & 1 deletion manual/develop/en/_modules/physbo/opt/adam.html
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<div itemprop="articleBody">

<h1>Source code for physbo.opt.adam</h1><div class="highlight"><pre>
<span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
<span></span><span class="c1"># SPDX-License-Identifier: MPL-2.0</span>
<span class="c1"># Copyright (C) 2020- The University of Tokyo</span>
<span class="c1">#</span>
<span class="c1"># This Source Code Form is subject to the terms of the Mozilla Public</span>
<span class="c1"># License, v. 2.0. If a copy of the MPL was not distributed with this</span>
<span class="c1"># file, You can obtain one at https://mozilla.org/MPL/2.0/.</span>

<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>


<div class="viewcode-block" id="adam">
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9 changes: 8 additions & 1 deletion manual/develop/en/_modules/physbo/predictor.html
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<div itemprop="articleBody">

<h1>Source code for physbo.predictor</h1><div class="highlight"><pre>
<span></span><span class="kn">import</span> <span class="nn">pickle</span> <span class="k">as</span> <span class="nn">pickle</span>
<span></span><span class="c1"># SPDX-License-Identifier: MPL-2.0</span>
<span class="c1"># Copyright (C) 2020- The University of Tokyo</span>
<span class="c1">#</span>
<span class="c1"># This Source Code Form is subject to the terms of the Mozilla Public</span>
<span class="c1"># License, v. 2.0. If a copy of the MPL was not distributed with this</span>
<span class="c1"># file, You can obtain one at https://mozilla.org/MPL/2.0/.</span>

<span class="kn">import</span> <span class="nn">pickle</span> <span class="k">as</span> <span class="nn">pickle</span>
<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
<span class="kn">from</span> <span class="nn">physbo</span> <span class="kn">import</span> <span class="n">gp</span>

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