Change License to MPLv2 (#55)

Change License to MPLv2

README.md

@@ -26,14 +26,14 @@ PHYSBO was developed based on [COMBO](https://github.com/tsudalab/combo) for aca
 - From PyPI (recommended)
 
 ```bash
-pip3 install physbo
+python3 -m pip install physbo
 ```
 
 - From source (for developers)
     1. Update pip (>= 19.0)
 
         ```bash
-        pip3 install -U pip
+        python3 -m pip install -U pip
         ```
 
     1. Download or clone the github repository
@@ -48,15 +48,15 @@ pip3 install physbo
         # ./PHYSBO is the root directory of PHYSBO
         # pip install options such as --user are avaiable
 
-        pip3 install ./PHYSBO
+        python3 -m pip install ./PHYSBO
         ```
 
     1. Note: Do not `import physbo` at the root directory of the repository because `import physbo` does not try to import the installed PHYSBO but one in the repository, which includes Cython codes not compiled.
 
 ## Uninstall
 
 ```bash
-pip3 uninstall physbo
+python3 -m pip uninstall physbo
 ```
 
 ## Usage
@@ -70,7 +70,7 @@ A tutorial and a dataset of a paper about PHYSBO can be found in [PHYSBO Gallery
 ## License
 
 PHYSBO was developed based on [COMBO](https://github.com/tsudalab/COMBO) for academic use.
-This package is distributed under GNU General Public License version 3 (GPL v3) or later.
+PHYSBO v2 is distributed under Mozilla Public License version 2.0 (MPL v2).
 We hope that you cite the following reference when you publish the results using PHYSBO:
 
 [“Bayesian optimization package: PHYSBO”, Yuichi Motoyama, Ryo Tamura, Kazuyoshi Yoshimi, Kei Terayama, Tsuyoshi Ueno, Koji Tsuda, Computer Physics Communications Volume 278, September 2022, 108405.](https://doi.org/10.1016/j.cpc.2022.108405)

docs/sphinx/manual/en/source/introduction.rst

@@ -52,8 +52,8 @@ Main Developers
 License
 ----------------------
 
-GNU General Public License version 3
+PHYSBO v2 is distributed under `the Mozilla Public License version 2.0 (MPL v2) <https://www.mozilla.org/en-US/MPL/2.0/>`_.
 
 Copyright (c) <2020-> The University of Tokyo. All rights reserved.
 
-Part of this software is developed under the support of “Project for advancement of software usability in materials science” by The Institute for Solid State Physics, The University of Tokyo.
+Part of this software is developed under the support of "Project for advancement of software usability in materials science" by The Institute for Solid State Physics, The University of Tokyo.

docs/sphinx/manual/ja/source/introduction.rst

@@ -68,8 +68,7 @@ Bibtexは以下の通りです。 ::
 
 ライセンス
 ----------------------
-| 本ソフトウェアのプログラムパッケージおよびソースコード一式はGNU
-  General Public License version 3（GPL v3）に準じて配布されています。
+| PHYSBO v2 のソースコードは Mozilla Public License version 2.0（MPL v2）のもとで公開・頒布されています。
 
 Copyright (c) <2020-> The University of Tokyo. All rights reserved.
 

examples/multiple.py

@@ -1,3 +1,10 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 import itertools
 
 import numpy as np

examples/multiple_score.py

@@ -1,3 +1,10 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 import itertools
 
 import numpy as np

examples/simple.py

@@ -1,3 +1,10 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 import numpy as np
 import physbo
 

examples/simple_score.py

@@ -1,3 +1,10 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 import numpy as np
 import physbo
 

examples/simple_time.py

@@ -1,3 +1,10 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 ### This example describes how to save elapsed time
 
 

physbo/__init__.py

@@ -1,3 +1,10 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 from . import gp
 from . import opt
 from . import blm

physbo/blm/__init__.py

@@ -1,3 +1,10 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 """ Bayesian Linear Model
 """
 

physbo/blm/basis/__init__.py

@@ -1 +1,8 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 from .fourier import fourier

physbo/blm/basis/fourier.py

@@ -1,3 +1,10 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 # -*- coding:utf-8 -*-
 import numpy as np
 

physbo/blm/core/__init__.py

@@ -1 +1,8 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 from .model import model

physbo/blm/core/model.py

@@ -1,3 +1,10 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 import numpy as np
 from .. import inf
 

physbo/blm/inf/__init__.py

@@ -1 +1,8 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 from . import exact

physbo/blm/inf/exact.py

@@ -1,3 +1,10 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 import numpy as np
 import scipy
 

physbo/blm/lik/__init__.py

@@ -1,3 +1,10 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 from ._src import cov
 from .linear import linear
 from .gauss import gauss

physbo/blm/lik/_src/__init__.py

@@ -1 +1,8 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 from .cov import cov

physbo/blm/lik/_src/cov.py

@@ -1,3 +1,10 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 import numpy as np
 
 

physbo/blm/lik/gauss.py

@@ -1,3 +1,10 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 import numpy as np
 
 

physbo/blm/lik/linear.py

@@ -1,3 +1,10 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 import numpy as np
 
 

physbo/blm/predictor.py

@@ -1,3 +1,10 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 import physbo.predictor
 
 

physbo/blm/prior/__init__.py

@@ -1 +1,8 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 from .gauss import gauss

physbo/blm/prior/gauss.py

@@ -1,3 +1,10 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 import numpy as np
 
 

physbo/gp/__init__.py

@@ -1,3 +1,10 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 from . import cov
 from . import mean
 from . import lik

physbo/gp/core/__init__.py

@@ -1,3 +1,10 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 from .prior import prior
 from .model import model
 

physbo/gp/core/learning.py

@@ -1,3 +1,10 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 # coding=utf-8
 import numpy as np
 import scipy.optimize

physbo/gp/core/model.py

@@ -1,3 +1,10 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 import numpy as np
 
 from physbo import blm

physbo/gp/core/prior.py

@@ -1,3 +1,10 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 import numpy as np
 import scipy
 

physbo/gp/cov/__init__.py

@@ -1 +1,8 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 from .gauss import gauss

physbo/gp/cov/_src/__init__.py

@@ -0,0 +1 @@
+

physbo/gp/cov/_src/enhance_gauss.pyx

@@ -1,3 +1,10 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 import numpy as np
 cimport numpy as np
 import cython

physbo/gp/cov/gauss.py

@@ -1,3 +1,10 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 # -*- coding:utf-8 -*-
 import numpy as np
 from scipy import spatial

physbo/gp/inf/__init__.py

@@ -1 +1,8 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 from . import exact

physbo/gp/inf/exact.py

@@ -1,3 +1,10 @@
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (C) 2020- The University of Tokyo
+#
+# This Source Code Form is subject to the terms of the Mozilla Public
+# License, v. 2.0. If a copy of the MPL was not distributed with this
+# file, You can obtain one at https://mozilla.org/MPL/2.0/.
+
 import numpy as np
 import scipy
 from ... import misc