add tests for resume/continue

tests/bayes_continue/MeshData.txt

@@ -0,0 +1,121 @@
+0 -5.0 -5.0
+1 -5.0 -4.0
+2 -5.0 -3.0
+3 -5.0 -2.0
+4 -5.0 -1.0
+5 -5.0 0.0
+6 -5.0 1.0
+7 -5.0 2.0
+8 -5.0 3.0
+9 -5.0 4.0
+10 -5.0 5.0
+11 -4.0 -5.0
+12 -4.0 -4.0
+13 -4.0 -3.0
+14 -4.0 -2.0
+15 -4.0 -1.0
+16 -4.0 0.0
+17 -4.0 1.0
+18 -4.0 2.0
+19 -4.0 3.0
+20 -4.0 4.0
+21 -4.0 5.0
+22 -3.0 -5.0
+23 -3.0 -4.0
+24 -3.0 -3.0
+25 -3.0 -2.0
+26 -3.0 -1.0
+27 -3.0 0.0
+28 -3.0 1.0
+29 -3.0 2.0
+30 -3.0 3.0
+31 -3.0 4.0
+32 -3.0 5.0
+33 -2.0 -5.0
+34 -2.0 -4.0
+35 -2.0 -3.0
+36 -2.0 -2.0
+37 -2.0 -1.0
+38 -2.0 0.0
+39 -2.0 1.0
+40 -2.0 2.0
+41 -2.0 3.0
+42 -2.0 4.0
+43 -2.0 5.0
+44 -1.0 -5.0
+45 -1.0 -4.0
+46 -1.0 -3.0
+47 -1.0 -2.0
+48 -1.0 -1.0
+49 -1.0 0.0
+50 -1.0 1.0
+51 -1.0 2.0
+52 -1.0 3.0
+53 -1.0 4.0
+54 -1.0 5.0
+55 0.0 -5.0
+56 0.0 -4.0
+57 0.0 -3.0
+58 0.0 -2.0
+59 0.0 -1.0
+60 0.0 0.0
+61 0.0 1.0
+62 0.0 2.0
+63 0.0 3.0
+64 0.0 4.0
+65 0.0 5.0
+66 1.0 -5.0
+67 1.0 -4.0
+68 1.0 -3.0
+69 1.0 -2.0
+70 1.0 -1.0
+71 1.0 0.0
+72 1.0 1.0
+73 1.0 2.0
+74 1.0 3.0
+75 1.0 4.0
+76 1.0 5.0
+77 2.0 -5.0
+78 2.0 -4.0
+79 2.0 -3.0
+80 2.0 -2.0
+81 2.0 -1.0
+82 2.0 0.0
+83 2.0 1.0
+84 2.0 2.0
+85 2.0 3.0
+86 2.0 4.0
+87 2.0 5.0
+88 3.0 -5.0
+89 3.0 -4.0
+90 3.0 -3.0
+91 3.0 -2.0
+92 3.0 -1.0
+93 3.0 0.0
+94 3.0 1.0
+95 3.0 2.0
+96 3.0 3.0
+97 3.0 4.0
+98 3.0 5.0
+99 4.0 -5.0
+100 4.0 -4.0
+101 4.0 -3.0
+102 4.0 -2.0
+103 4.0 -1.0
+104 4.0 0.0
+105 4.0 1.0
+106 4.0 2.0
+107 4.0 3.0
+108 4.0 4.0
+109 4.0 5.0
+110 5.0 -5.0
+111 5.0 -4.0
+112 5.0 -3.0
+113 5.0 -2.0
+114 5.0 -1.0
+115 5.0 0.0
+116 5.0 1.0
+117 5.0 2.0
+118 5.0 3.0
+119 5.0 4.0
+120 5.0 5.0

tests/bayes_continue/do.sh

@@ -0,0 +1,28 @@
+#!/bin/sh
+
+CMD="python3 -u ../../src/py2dmat_main.py"
+
+rm -rf output1
+
+time $CMD input1a.toml
+time $CMD --cont input1b.toml
+
+rm -rf output2
+
+time $CMD input2.toml
+
+
+resfile=output1/BayesData.txt
+reffile=output2/BayesData.txt
+
+echo diff $resfile $reffile
+res=0
+diff $resfile $reffile || res=$?
+if [ $res -eq 0 ]; then
+  echo TEST PASS
+  true
+else
+  echo TEST FAILED: $resfile and $reffile differ
+  false
+fi
+

tests/bayes_continue/input1a.toml

@@ -0,0 +1,21 @@
+[base]
+dimension = 2
+output_dir = "output1"
+
+[solver]
+name = "analytical"
+function_name = "rosenbrock"
+
+[algorithm]
+name = "bayes"
+label_list = ["z1", "z2"]
+seed = 1
+checkpoint = true
+checkpoint_steps = 8
+
+[algorithm.param]
+mesh_path = "MeshData.txt"
+
+[algorithm.bayes]
+random_max_num_probes = 5
+bayes_max_num_probes = 20

tests/bayes_continue/input1b.toml

@@ -0,0 +1,21 @@
+[base]
+dimension = 2
+output_dir = "output1"
+
+[solver]
+name = "analytical"
+function_name = "rosenbrock"
+
+[algorithm]
+name = "bayes"
+label_list = ["z1", "z2"]
+seed = 1
+checkpoint = true
+checkpoint_steps = 8
+
+[algorithm.param]
+mesh_path = "MeshData.txt"
+
+[algorithm.bayes]
+random_max_num_probes = 5
+bayes_max_num_probes = 30

tests/bayes_continue/input2.toml

@@ -0,0 +1,21 @@
+[base]
+dimension = 2
+output_dir = "output2"
+
+[solver]
+name = "analytical"
+function_name = "rosenbrock"
+
+[algorithm]
+name = "bayes"
+label_list = ["z1", "z2"]
+seed = 1
+checkpoint = true
+checkpoint_steps = 8
+
+[algorithm.param]
+mesh_path = "MeshData.txt"
+
+[algorithm.bayes]
+random_max_num_probes = 5
+bayes_max_num_probes = 30

tests/exchange_continue/do.sh

@@ -0,0 +1,30 @@
+#!/bin/sh
+
+CMD="mpiexec -np 4 python3 -u ../../src/py2dmat_main.py"
+
+rm -rf output1
+
+time $CMD input1a.toml
+time $CMD --cont input1b.toml
+
+rm -rf output2
+
+time $CMD input2.toml
+
+
+#resfile=output1/best_result.txt
+#reffile=output2/best_result.txt
+resfile=output1/result_T0.txt
+reffile=output2/result_T0.txt
+
+echo diff $resfile $reffile
+res=0
+diff $resfile $reffile || res=$?
+if [ $res -eq 0 ]; then
+  echo TEST PASS
+  true
+else
+  echo TEST FAILED: $resfile and $reffile differ
+  false
+fi
+

tests/exchange_continue/input1a.toml

@@ -0,0 +1,24 @@
+[base]
+dimension = 2
+output_dir = "output1"
+
+[algorithm]
+name = "exchange"
+seed = 12345
+checkpoint = true
+checkpoint_steps = 1000
+
+[algorithm.param]
+min_list = [-5.0, -5.0]
+max_list = [5.0, 5.0]
+
+[algorithm.exchange]
+numsteps = 10000
+numsteps_exchange = 20
+Tmin = 0.1
+Tmax = 1.0
+Tlogspace = false
+
+[solver]
+name = "analytical"
+function_name = "rosenbrock"

tests/exchange_continue/input1b.toml

@@ -0,0 +1,24 @@
+[base]
+dimension = 2
+output_dir = "output1"
+
+[algorithm]
+name = "exchange"
+seed = 12345
+checkpoint = true
+checkpoint_steps = 5000
+
+[algorithm.param]
+min_list = [-5.0, -5.0]
+max_list = [5.0, 5.0]
+
+[algorithm.exchange]
+numsteps = 20000
+numsteps_exchange = 20
+Tmin = 0.1
+Tmax = 1.0
+Tlogspace = false
+
+[solver]
+name = "analytical"
+function_name = "rosenbrock"

tests/exchange_continue/input2.toml

@@ -0,0 +1,24 @@
+[base]
+dimension = 2
+output_dir = "output2"
+
+[algorithm]
+name = "exchange"
+seed = 12345
+checkpoint = true
+checkpoint_steps = 1000
+
+[algorithm.param]
+min_list = [-5.0, -5.0]
+max_list = [5.0, 5.0]
+
+[algorithm.exchange]
+numsteps = 20000
+numsteps_exchange = 20
+Tmin = 0.1
+Tmax = 1.0
+Tlogspace = false
+
+[solver]
+name = "analytical"
+function_name = "rosenbrock"