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Question: "-C" parameter when several closed bacterial contigs? #85

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ghost opened this issue Feb 7, 2018 · 0 comments
Open

Question: "-C" parameter when several closed bacterial contigs? #85

ghost opened this issue Feb 7, 2018 · 0 comments

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@ghost
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ghost commented Feb 7, 2018

I have an assembly with one chromosome and three large plasmids.
Will the "-C" option still make sense? Does GraphMap assume that every one of the four contigs is circular?
Or does it just work if I have one contig?
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