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std::bad_alloc when using "-a anchorgotoh" #84

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ghost opened this issue Nov 29, 2017 · 1 comment
Open

std::bad_alloc when using "-a anchorgotoh" #84

ghost opened this issue Nov 29, 2017 · 1 comment

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@ghost
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ghost commented Nov 29, 2017

I have Oxford Nanopore data of a bacterium. I am mapping the reads to an assembly of the same identical strain to check the assembly.

If I use the standard alignment alogrithm (anchor) all works fine.
However, if I use "anchorgotoh" it get the exception "std::bad_alloc". I have to say that we have a lot of really long reads (>400kb).

Is this a known problem? How can I help to debug?

@ghost
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ghost commented Dec 4, 2017

Same problem with "sggotoh"

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