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how to get the supplementary alignment #105

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WellJoea opened this issue Nov 15, 2020 · 0 comments

WellJoea commented Nov 15, 2020 •

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I used graphmap with the command as follows:

$GRAPHMAP align \ 
    -r $REF \ 
    -i $IDX \ 
    -d $FQ \ 
    -t 20 \ 
    --ambiguity 0.02 \ 
    --secondary \ 
  -o $OU

But, the result cannot get the secondary and supplementary alignment.

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