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b1552ab
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Hi!
Without the changes at https://github.com/iqtree/iqtree2/pull/148/files#diff-1e7de1ae2d059d21e1dd75d5812d5a34b0222cef273b7c3a2af62eb747f9d20a I still get the following build failure on Linux ARM64:
mgrigorov in 🌐 euler-arm-22 in iqtree2/build on master [$] ❯ cmake -DUSE_LSD2=ON -DIQTREE_FLAGS=omp .. -- The C compiler identification is GNU 10.3.1 -- The CXX compiler identification is GNU 10.3.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Boost: /usr/include (found version "1.78.0") IQ-TREE flags : omp Build mode : Release Target OS : Unix Compiler : GNU Compiler (gcc) Compiler version: 10.3.1 Target binary : 64-bit OpenMP : Yes MPI : NONE Vectorization : SSE3/AVX/AVX2 C flags : -pthread -O2 -g -ffunction-sections -fdata-sections CXX flags : -std=c++11 -fopenmp -pthread -O2 -g -ffunction-sections -fdata-sections LINKER flags : -rdynamic -Wl,--gc-sections -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for getrusage -- Looking for getrusage - found -- Looking for GlobalMemoryStatusEx -- Looking for GlobalMemoryStatusEx - not found -- Looking for strndup -- Looking for strndup - found -- Looking for strtok_r -- Looking for strtok_r - found -- Looking for backtrace -- Looking for backtrace - found -- backtrace facility detected in default set of libraries -- Found Backtrace: /usr/include -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.11") Using system zlib -- Performing Test FLAG_WEXTRA -- Performing Test FLAG_WEXTRA - Success -- clang-tidy not found. -- Configuring done -- Generating done -- Build files have been written to: /home/mgrigorov/git/bioconda/iqtree2/build mgrigorov in 🌐 euler-arm-22 in iqtree2/build on master [$] via C v10.3.1-gcc via △ v3.22.0 ❯ make -j [ 1%] Building CXX object CMakeFiles/kernelavx.dir/tree/phylotreeavx.cpp.o [ 1%] Building CXX object CMakeFiles/kernelsse.dir/tree/phylokernelsse.cpp.o [ 1%] Building CXX object lsd2/CMakeFiles/lsd2.dir/src/confidence_interval.cpp.o [ 1%] Building CXX object CMakeFiles/kernelfma.dir/tree/phylokernelfma.cpp.o [ 1%] Building C object booster/CMakeFiles/booster.dir/bitset_index.c.o [ 2%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsassumptionsblock.cpp.o [ 2%] Building C object pll/CMakeFiles/pll.dir/alignment.c.o c++: error: unrecognized command-line option ‘-mavx’ make[2]: *** [CMakeFiles/kernelavx.dir/build.make:76: CMakeFiles/kernelavx.dir/tree/phylotreeavx.cpp.o] Error 1 c++: error: unrecognized command-line option ‘-mavx’ c++: error: unrecognized command-line option ‘-mfma’ make[2]: *** [CMakeFiles/kernelfma.dir/build.make:76: CMakeFiles/kernelfma.dir/tree/phylokernelfma.cpp.o] Error 1 [ 2%] Building CXX object lsd2/CMakeFiles/lsd2.dir/src/dating.cpp.o [ 3%] Building CXX object ncl/CMakeFiles/ncl.dir/nxscharactersblock.cpp.o [ 3%] Building C object booster/CMakeFiles/booster.dir/hashmap.c.o c++: error: unrecognized command-line option ‘-msse3’ [ 4%] Building C object pll/CMakeFiles/pll.dir/bipartitionList.c.o [ 5%] Building CXX object nclextra/CMakeFiles/nclextra.dir/mpdablock.cpp.o [ 5%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsblock.cpp.o make[2]: *** [CMakeFiles/kernelsse.dir/build.make:76: CMakeFiles/kernelsse.dir/tree/phylokernelsse.cpp.o] Error 1 c++: error: unrecognized command-line option ‘-msse3’ make[2]: *** [lsd2/CMakeFiles/lsd2.dir/build.make:76: lsd2/CMakeFiles/lsd2.dir/src/confidence_interval.cpp.o] Error 1 make[2]: *** Waiting for unfinished jobs.... [ 5%] Building CXX object nclextra/CMakeFiles/nclextra.dir/msetsblock.cpp.o [ 5%] Building C object pll/CMakeFiles/pll.dir/evaluateGenericSpecial.c.o c++: error: unrecognized command-line option ‘-msse3’ c++: error: unrecognized command-line option ‘-msse3’ make[2]: *** [lsd2/CMakeFiles/lsd2.dir/build.make:90: lsd2/CMakeFiles/lsd2.dir/src/dating.cpp.o] Error 1 [ 6%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsdatablock.cpp.o [ 6%] Building C object sprng/CMakeFiles/sprng.dir/lcg64.c.o make[1]: *** [CMakeFiles/Makefile2:491: CMakeFiles/kernelsse.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... make[1]: *** [CMakeFiles/Makefile2:517: CMakeFiles/kernelavx.dir/all] Error 2 make[1]: *** [CMakeFiles/Makefile2:1342: lsd2/CMakeFiles/lsd2.dir/all] Error 2 make[1]: *** [CMakeFiles/Makefile2:543: CMakeFiles/kernelfma.dir/all] Error 2 [ 6%] Building CXX object nclextra/CMakeFiles/nclextra.dir/msplitsblock.cpp.o c++: error: unrecognized command-line option ‘-msse3’ c++: error: unrecognized command-line option ‘-msse3’ [ 7%] Building C object sprng/CMakeFiles/sprng.dir/makeseed.c.o c++: error: unrecognized command-line option ‘-msse3’ [ 7%] Building C object pll/CMakeFiles/pll.dir/evaluatePartialGenericSpecial.c.o make[2]: *** [ncl/CMakeFiles/ncl.dir/build.make:76: ncl/CMakeFiles/ncl.dir/nxsassumptionsblock.cpp.o] Error 1 make[2]: *** Waiting for unfinished jobs.... make[2]: *** [ncl/CMakeFiles/ncl.dir/build.make:90: ncl/CMakeFiles/ncl.dir/nxsblock.cpp.o] Error 1 make[2]: *** [ncl/CMakeFiles/ncl.dir/build.make:104: ncl/CMakeFiles/ncl.dir/nxscharactersblock.cpp.o] Error 1 [ 7%] Building C object booster/CMakeFiles/booster.dir/io.c.o [ 7%] Building C object booster/CMakeFiles/booster.dir/sort.c.o c++: error: unrecognized command-line option ‘-msse3’ make[2]: *** [nclextra/CMakeFiles/nclextra.dir/build.make:76: nclextra/CMakeFiles/nclextra.dir/mpdablock.cpp.o] Error 1 make[2]: *** Waiting for unfinished jobs.... make[2]: *** [nclextra/CMakeFiles/nclextra.dir/build.make:90: nclextra/CMakeFiles/nclextra.dir/msetsblock.cpp.o] Error 1 c++: error: unrecognized command-line option ‘-msse3’ make[2]: *** [ncl/CMakeFiles/ncl.dir/build.make:118: ncl/CMakeFiles/ncl.dir/nxsdatablock.cpp.o] Error 1 make[1]: *** [CMakeFiles/Makefile2:738: ncl/CMakeFiles/ncl.dir/all] Error 2 c++: error: unrecognized command-line option ‘-msse3’ make[2]: *** [nclextra/CMakeFiles/nclextra.dir/build.make:104: nclextra/CMakeFiles/nclextra.dir/msplitsblock.cpp.o] Error 1 make[1]: *** [CMakeFiles/Makefile2:764: nclextra/CMakeFiles/nclextra.dir/all] Error 2 [ 7%] Building C object sprng/CMakeFiles/sprng.dir/memory.c.o cc: error: unrecognized command-line option ‘-msse3’ cc: error: unrecognized command-line option ‘-msse3’ cc: error: unrecognized command-line option ‘-msse3’ cc: error: unrecognized command-line option ‘-msse3’ cc: error: unrecognized command-line option ‘-msse3’ cc: error: unrecognized command-line option ‘-msse3’ cc: error: unrecognized command-line option ‘-msse3’ [ 8%] Building C object pll/CMakeFiles/pll.dir/fastDNAparsimony.c.o [ 8%] Building C object pll/CMakeFiles/pll.dir/hardware.c.o make[2]: *** [booster/CMakeFiles/booster.dir/build.make:76: booster/CMakeFiles/booster.dir/bitset_index.c.o] Error 1 make[2]: *** Waiting for unfinished jobs.... make[2]: *** [booster/CMakeFiles/booster.dir/build.make:90: booster/CMakeFiles/booster.dir/hashmap.c.o] Error 1 make[2]: *** [booster/CMakeFiles/booster.dir/build.make:104: booster/CMakeFiles/booster.dir/io.c.o] Error 1 cc: error: unrecognized command-line option ‘-msse3’ cc: error: unrecognized command-line option ‘-msse3’ make[2]: *** [sprng/CMakeFiles/sprng.dir/build.make:76: sprng/CMakeFiles/sprng.dir/lcg64.c.o] Error 1 make[2]: *** Waiting for unfinished jobs.... make[2]: *** [sprng/CMakeFiles/sprng.dir/build.make:90: sprng/CMakeFiles/sprng.dir/makeseed.c.o] Error 1 make[2]: *** [pll/CMakeFiles/pll.dir/build.make:76: pll/CMakeFiles/pll.dir/alignment.c.o] Error 1 make[2]: *** Waiting for unfinished jobs.... make[2]: *** [pll/CMakeFiles/pll.dir/build.make:90: pll/CMakeFiles/pll.dir/bipartitionList.c.o] Error 1 make[2]: *** [pll/CMakeFiles/pll.dir/build.make:104: pll/CMakeFiles/pll.dir/evaluateGenericSpecial.c.o] Error 1 make[2]: *** [pll/CMakeFiles/pll.dir/build.make:118: pll/CMakeFiles/pll.dir/evaluatePartialGenericSpecial.c.o] Error 1 [ 8%] Building CXX object lbfgsb/CMakeFiles/lbfgsb.dir/lbfgsb_new.cpp.o [ 8%] Building C object pll/CMakeFiles/pll.dir/hash.c.o [ 9%] Building C object booster/CMakeFiles/booster.dir/tree.c.o [ 10%] Building C object pll/CMakeFiles/pll.dir/lexer.c.o cc: error: unrecognized command-line option ‘-msse3’ make[2]: *** [booster/CMakeFiles/booster.dir/build.make:118: booster/CMakeFiles/booster.dir/sort.c.o] Error 1 cc: error: unrecognized command-line option ‘-msse3’ cc: error: unrecognized command-line option ‘-msse3’ make[2]: *** [sprng/CMakeFiles/sprng.dir/build.make:104: sprng/CMakeFiles/sprng.dir/memory.c.o] Error 1 make[2]: *** [pll/CMakeFiles/pll.dir/build.make:132: pll/CMakeFiles/pll.dir/fastDNAparsimony.c.o] Error 1 make[1]: *** [CMakeFiles/Makefile2:921: sprng/CMakeFiles/sprng.dir/all] Error 2 c++: error: unrecognized command-line option ‘-msse3’ cc: error: unrecognized command-line option ‘-msse3’ cc: error: unrecognized command-line option ‘-msse3’ make[2]: *** [pll/CMakeFiles/pll.dir/build.make:146: pll/CMakeFiles/pll.dir/hardware.c.o] Error 1 make[2]: *** [booster/CMakeFiles/booster.dir/build.make:132: booster/CMakeFiles/booster.dir/tree.c.o] Error 1 make[2]: *** [lbfgsb/CMakeFiles/lbfgsb.dir/build.make:76: lbfgsb/CMakeFiles/lbfgsb.dir/lbfgsb_new.cpp.o] Error 1 make[1]: *** [CMakeFiles/Makefile2:619: booster/CMakeFiles/booster.dir/all] Error 2 make[1]: *** [CMakeFiles/Makefile2:869: lbfgsb/CMakeFiles/lbfgsb.dir/all] Error 2 cc: error: unrecognized command-line option ‘-msse3’ cc: error: unrecognized command-line option ‘-msse3’ make[2]: *** [pll/CMakeFiles/pll.dir/build.make:160: pll/CMakeFiles/pll.dir/hash.c.o] Error 1 make[2]: *** [pll/CMakeFiles/pll.dir/build.make:174: pll/CMakeFiles/pll.dir/lexer.c.o] Error 1 [ 10%] Building C object pll/CMakeFiles/pll.dir/makenewzGenericSpecial.c.o cc: error: unrecognized command-line option ‘-msse3’ make[2]: *** [pll/CMakeFiles/pll.dir/build.make:188: pll/CMakeFiles/pll.dir/makenewzGenericSpecial.c.o] Error 1 make[1]: *** [CMakeFiles/Makefile2:712: pll/CMakeFiles/pll.dir/all] Error 2 make: *** [Makefile:156: all] Error 2
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Hi!
Without the changes at https://github.com/iqtree/iqtree2/pull/148/files#diff-1e7de1ae2d059d21e1dd75d5812d5a34b0222cef273b7c3a2af62eb747f9d20a I still get the following build failure on Linux ARM64: