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bug fix --filter_min_frs should be float (#124) #33

bug fix --filter_min_frs should be float (#124)

bug fix --filter_min_frs should be float (#124) #33

Workflow file for this run

name: Build minos images
on:
workflow_dispatch:
push:
tags:
- 'v*.*.*'
branches:
- master
pull_request:
branches:
- master
env:
REGISTRY: ghcr.io
IMAGE_NAME: ${{ github.repository }}
jobs:
build:
name: Build
runs-on: ubuntu-20.04
steps:
- name: Set up Go 1.16
uses: actions/setup-go@v1
with:
go-version: 1.16
id: go
- name: Install Dependencies
run: |
sudo apt-get update && sudo apt-get install -y \
build-essential \
libssl-dev \
uuid-dev \
libgpgme11-dev \
squashfs-tools \
libseccomp-dev \
pkg-config \
debootstrap \
debian-keyring \
debian-archive-keyring \
rsync
- name: Install Singularity
env:
SINGULARITY_VERSION: 3.5.3
GOPATH: /tmp/go
run: |
mkdir -p $GOPATH
sudo mkdir -p /usr/local/var/singularity/mnt
mkdir -p $GOPATH/src/github.com/sylabs
cd $GOPATH/src/github.com/sylabs
wget https://github.com/hpcng/singularity/releases/download/v${SINGULARITY_VERSION}/singularity-${SINGULARITY_VERSION}.tar.gz
tar -xzf singularity-${SINGULARITY_VERSION}.tar.gz
cd singularity
./mconfig -v -p /usr/local
make -j `nproc 2>/dev/null || echo 1` -C ./builddir all
sudo make -C ./builddir install
- name: Check out code for the container build
uses: actions/checkout@v2
- name: Set release version if is a release
if: startsWith(github.event.ref, 'refs/tags/v')
run: echo "RELEASE_VERSION=${GITHUB_REF#refs/*/}" >> $GITHUB_ENV
- name: Set release version if not a release
if: false == startsWith(github.event.ref, 'refs/tags/v')
run: echo "RELEASE_VERSION=test" >> $GITHUB_ENV
- name: Build Singularity container
env:
SINGULARITY_RECIPE: Singularity.def
OUTPUT_CONTAINER: minos_${{env.RELEASE_VERSION}}.img
run: |
ls
if [ -f "${SINGULARITY_RECIPE}" ]; then
sudo -E singularity build ${OUTPUT_CONTAINER} ${SINGULARITY_RECIPE}
else
echo "${SINGULARITY_RECIPE} is not found."
echo "Present working directory: $PWD"
ls
fi
- name: Release
if: startsWith(github.event.ref, 'refs/tags/v')
uses: softprops/action-gh-release@v1
with:
files: minos*.img
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
- name: Log in to github container registry
if: startsWith(github.event.ref, 'refs/tags/v')
uses: docker/login-action@f054a8b539a109f9f41c372932f1ae047eff08c9
with:
registry: ${{ env.REGISTRY }}
username: ${{ github.actor }}
password: ${{ secrets.GITHUB_TOKEN }}
- name: Extract metadata (tags, labels) for Docker
if: startsWith(github.event.ref, 'refs/tags/v')
id: meta
uses: docker/metadata-action@98669ae865ea3cffbcbaa878cf57c20bbf1c6c38
with:
images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}
- name: Build and push Docker image
if: startsWith(github.event.ref, 'refs/tags/v')
uses: docker/build-push-action@ad44023a93711e3deb337508980b4b5e9bcdc5dc
with:
context: .
push: true
tags: ${{ steps.meta.outputs.tags }}
labels: ${{ steps.meta.outputs.labels }}