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@ocefpaf
ocefpaf committed Aug 30, 2023
1 parent 1e9d45f commit 703c6c4
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Showing 24 changed files with 132 additions and 50 deletions.
6 changes: 5 additions & 1 deletion jupyterbook/content/code_gallery/data_access_notebooks/2016-10-12-fetching_data.ipynb
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Expand Up @@ -13,16 +13,20 @@
"import subprocess\n",
"import sys\n",
"\n",
"\n",
"def _install(package):\n",
" subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
"\n",
"\n",
"def _colab_install_missing_deps(deps):\n",
" import importlib\n",
"\n",
" for dep in deps:\n",
" if importlib.util.find_spec(dep) is None:\n",
" _install(dep)\n",
"\n",
"deps = ['erddapy']\n",
"\n",
"deps = [\"erddapy\"]\n",
"_colab_install_missing_deps(deps)"
]
},
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6 changes: 5 additions & 1 deletion jupyterbook/content/code_gallery/data_access_notebooks/2016-11-15-glider_data_example.ipynb
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Expand Up @@ -13,16 +13,20 @@
"import subprocess\n",
"import sys\n",
"\n",
"\n",
"def _install(package):\n",
" subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
"\n",
"\n",
"def _colab_install_missing_deps(deps):\n",
" import importlib\n",
"\n",
" for dep in deps:\n",
" if importlib.util.find_spec(dep) is None:\n",
" _install(dep)\n",
"\n",
"deps = ['cf_xarray', 'palettable', 'seawater']\n",
"\n",
"deps = [\"cf_xarray\", \"palettable\", \"seawater\"]\n",
"_colab_install_missing_deps(deps)"
]
},
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6 changes: 5 additions & 1 deletion .../content/code_gallery/data_access_notebooks/2016-12-20-searching_glider_deployments.ipynb
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Expand Up @@ -13,16 +13,20 @@
"import subprocess\n",
"import sys\n",
"\n",
"\n",
"def _install(package):\n",
" subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
"\n",
"\n",
"def _colab_install_missing_deps(deps):\n",
" import importlib\n",
"\n",
" for dep in deps:\n",
" if importlib.util.find_spec(dep) is None:\n",
" _install(dep)\n",
"\n",
"deps = ['iris', 'seawater']\n",
"\n",
"deps = [\"iris\", \"seawater\"]\n",
"_colab_install_missing_deps(deps)"
]
},
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26 changes: 11 additions & 15 deletions ...erbook/content/code_gallery/data_access_notebooks/2017-01-18-siphon-explore-thredds.ipynb
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Expand Up @@ -52,17 +52,15 @@
"catalog = TDSCatalog(\"https://thredds.cencoos.org/thredds/catalog.xml\")\n",
"\n",
"\n",
"info = \"\"\"\n",
"info = f\"\"\"\n",
"Catalog information\n",
"-------------------\n",
"\n",
"Base THREDDS URL: {}\n",
"Catalog name: {}\n",
"Catalog URL: {}\n",
"Metadata: {}\n",
"\"\"\".format(\n",
" catalog.base_tds_url, catalog.catalog_name, catalog.catalog_url, catalog.metadata\n",
")\n",
"Base THREDDS URL: {catalog.base_tds_url}\n",
"Catalog name: {catalog.catalog_name}\n",
"Catalog URL: {catalog.catalog_url}\n",
"Metadata: {catalog.metadata}\n",
"\"\"\"\n",
"\n",
"print(info)"
]
Expand Down Expand Up @@ -234,13 +232,11 @@
}
],
"source": [
"info = \"\"\"\n",
"Href: {}\n",
"Name: {}\n",
"Title: {}\n",
"\"\"\".format(\n",
" ref.href, ref.name, ref.title\n",
")\n",
"info = f\"\"\"\n",
"Href: {ref.href}\n",
"Name: {ref.name}\n",
"Title: {ref.title}\n",
"\"\"\"\n",
"\n",
"print(info)"
]
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6 changes: 5 additions & 1 deletion ...erbook/content/code_gallery/data_access_notebooks/2017-03-21-ERDDAP_IOOS_Sensor_Map.ipynb
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Expand Up @@ -13,16 +13,20 @@
"import subprocess\n",
"import sys\n",
"\n",
"\n",
"def _install(package):\n",
" subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
"\n",
"\n",
"def _colab_install_missing_deps(deps):\n",
" import importlib\n",
"\n",
" for dep in deps:\n",
" if importlib.util.find_spec(dep) is None:\n",
" _install(dep)\n",
"\n",
"deps = ['erddapy']\n",
"\n",
"deps = [\"erddapy\"]\n",
"_colab_install_missing_deps(deps)"
]
},
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12 changes: 7 additions & 5 deletions ...rbook/content/code_gallery/data_access_notebooks/2017-06-12-NCEI_RA_archive_history.ipynb
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Expand Up @@ -13,16 +13,20 @@
"import subprocess\n",
"import sys\n",
"\n",
"\n",
"def _install(package):\n",
" subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
"\n",
"\n",
"def _colab_install_missing_deps(deps):\n",
" import importlib\n",
"\n",
" for dep in deps:\n",
" if importlib.util.find_spec(dep) is None:\n",
" _install(dep)\n",
"\n",
"deps = ['owslib']\n",
"\n",
"deps = [\"owslib\"]\n",
"_colab_install_missing_deps(deps)"
]
},
Expand Down Expand Up @@ -139,10 +143,8 @@
" \"SCCOOS\": \"Southern California Coastal Ocean Observing System\",\n",
" \"SECOORA\": \"Southeast Coastal Ocean Observing Regional Association\",\n",
" }\n",
" reg_assoc = '(dataThemeinstitutions_s:\"{}\" dataThemeprojects_s:\"{} ({})\")'.format(\n",
" RAs[ra],\n",
" RAs[ra],\n",
" ra,\n",
" reg_assoc = (\n",
" f'(dataThemeinstitutions_s:\"{RAs[ra]}\" dataThemeprojects_s:\"{RAs[ra]} ({ra})\")'\n",
" )\n",
"\n",
"# Identify the project.\n",
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10 changes: 7 additions & 3 deletions jupyterbook/content/code_gallery/data_access_notebooks/2017-09-09-hurricane_irma.ipynb
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Expand Up @@ -13,16 +13,20 @@
"import subprocess\n",
"import sys\n",
"\n",
"\n",
"def _install(package):\n",
" subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
"\n",
"\n",
"def _colab_install_missing_deps(deps):\n",
" import importlib\n",
"\n",
" for dep in deps:\n",
" if importlib.util.find_spec(dep) is None:\n",
" _install(dep)\n",
"\n",
"deps = ['cf-units', 'ioos-tools', 'pyoos', 'retrying']\n",
"\n",
"deps = [\"cf-units\", \"ioos-tools\", \"pyoos\", \"retrying\"]\n",
"_colab_install_missing_deps(deps)"
]
},
Expand Down Expand Up @@ -72,7 +76,7 @@
},
"outputs": [],
"source": [
"import sys\n",
"import sys # noqa\n",
"from pathlib import Path\n",
"from urllib.request import urlopen, urlretrieve\n",
"\n",
Expand Down Expand Up @@ -6544,7 +6548,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.10.4"
"version": "3.11.5"
}
},
"nbformat": 4,
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6 changes: 5 additions & 1 deletion jupyterbook/content/code_gallery/data_access_notebooks/2017-11-30-rerddap.ipynb
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Expand Up @@ -13,16 +13,20 @@
"import subprocess\n",
"import sys\n",
"\n",
"\n",
"def _install(package):\n",
" subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
"\n",
"\n",
"def _colab_install_missing_deps(deps):\n",
" import importlib\n",
"\n",
" for dep in deps:\n",
" if importlib.util.find_spec(dep) is None:\n",
" _install(dep)\n",
"\n",
"deps = ['cartopy']\n",
"\n",
"deps = [\"cartopy\"]\n",
"_colab_install_missing_deps(deps)"
]
},
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6 changes: 5 additions & 1 deletion jupyterbook/content/code_gallery/data_access_notebooks/2018-02-20-obis.ipynb
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Expand Up @@ -13,16 +13,20 @@
"import subprocess\n",
"import sys\n",
"\n",
"\n",
"def _install(package):\n",
" subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
"\n",
"\n",
"def _colab_install_missing_deps(deps):\n",
" import importlib\n",
"\n",
" for dep in deps:\n",
" if importlib.util.find_spec(dep) is None:\n",
" _install(dep)\n",
"\n",
"deps = ['palettable']\n",
"\n",
"deps = [\"palettable\"]\n",
"_colab_install_missing_deps(deps)"
]
},
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10 changes: 6 additions & 4 deletions jupyterbook/content/code_gallery/data_access_notebooks/2018-03-01-erddapy.ipynb
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Expand Up @@ -13,16 +13,20 @@
"import subprocess\n",
"import sys\n",
"\n",
"\n",
"def _install(package):\n",
" subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
"\n",
"\n",
"def _colab_install_missing_deps(deps):\n",
" import importlib\n",
"\n",
" for dep in deps:\n",
" if importlib.util.find_spec(dep) is None:\n",
" _install(dep)\n",
"\n",
"deps = ['erddapy', 'palettable']\n",
"\n",
"deps = [\"erddapy\", \"palettable\"]\n",
"_colab_install_missing_deps(deps)"
]
},
Expand Down Expand Up @@ -1216,9 +1220,7 @@
" )\n",
" if len(var) > 2:\n",
" raise Exception(\n",
" \"Found more than 1 variable with `standard_names` {}\\n{!r}\".format(\n",
" standard_names, var\n",
" )\n",
" f\"Found more than 1 variable with `standard_names` {standard_names}\\n{var!r}\"\n",
" )\n",
" variables.extend(var)\n",
" return variables"
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6 changes: 5 additions & 1 deletion jupyterbook/content/code_gallery/data_access_notebooks/2019-03-08-grids-temperature.ipynb
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Expand Up @@ -13,16 +13,20 @@
"import subprocess\n",
"import sys\n",
"\n",
"\n",
"def _install(package):\n",
" subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
"\n",
"\n",
"def _colab_install_missing_deps(deps):\n",
" import importlib\n",
"\n",
" for dep in deps:\n",
" if importlib.util.find_spec(dep) is None:\n",
" _install(dep)\n",
"\n",
"deps = ['cartopy', 'gridgeo', 'netcdf4', 'palettable']\n",
"\n",
"deps = [\"cartopy\", \"gridgeo\", \"netcdf4\", \"palettable\"]\n",
"_colab_install_missing_deps(deps)"
]
},
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6 changes: 5 additions & 1 deletion jupyterbook/content/code_gallery/data_access_notebooks/2019-05-27-hurricane_gis_part02.ipynb
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Expand Up @@ -13,16 +13,20 @@
"import subprocess\n",
"import sys\n",
"\n",
"\n",
"def _install(package):\n",
" subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
"\n",
"\n",
"def _colab_install_missing_deps(deps):\n",
" import importlib\n",
"\n",
" for dep in deps:\n",
" if importlib.util.find_spec(dep) is None:\n",
" _install(dep)\n",
"\n",
"deps = ['cf-units', 'ioos-tools', 'pyoos', 'retrying']\n",
"\n",
"deps = [\"cf-units\", \"ioos-tools\", \"pyoos\", \"retrying\"]\n",
"_colab_install_missing_deps(deps)"
]
},
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6 changes: 5 additions & 1 deletion jupyterbook/content/code_gallery/data_access_notebooks/2020-10-10-GTS.ipynb
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Expand Up @@ -13,16 +13,20 @@
"import subprocess\n",
"import sys\n",
"\n",
"\n",
"def _install(package):\n",
" subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
"\n",
"\n",
"def _colab_install_missing_deps(deps):\n",
" import importlib\n",
"\n",
" for dep in deps:\n",
" if importlib.util.find_spec(dep) is None:\n",
" _install(dep)\n",
"\n",
"deps = ['ipyleaflet']\n",
"\n",
"deps = [\"ipyleaflet\"]\n",
"_colab_install_missing_deps(deps)"
]
},
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6 changes: 5 additions & 1 deletion ...erbook/content/code_gallery/data_access_notebooks/2021-10-19-multiple-erddap-search.ipynb
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Expand Up @@ -13,16 +13,20 @@
"import subprocess\n",
"import sys\n",
"\n",
"\n",
"def _install(package):\n",
" subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
"\n",
"\n",
"def _colab_install_missing_deps(deps):\n",
" import importlib\n",
"\n",
" for dep in deps:\n",
" if importlib.util.find_spec(dep) is None:\n",
" _install(dep)\n",
"\n",
"deps = ['erddapy', 'ipyleaflet', 'seawater']\n",
"\n",
"deps = [\"erddapy\", \"ipyleaflet\", \"seawater\"]\n",
"_colab_install_missing_deps(deps)"
]
},
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6 changes: 5 additions & 1 deletion jupyterbook/content/code_gallery/data_access_notebooks/2022-11-23_pyobis_example.ipynb
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Expand Up @@ -13,16 +13,20 @@
"import subprocess\n",
"import sys\n",
"\n",
"\n",
"def _install(package):\n",
" subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
"\n",
"\n",
"def _colab_install_missing_deps(deps):\n",
" import importlib\n",
"\n",
" for dep in deps:\n",
" if importlib.util.find_spec(dep) is None:\n",
" _install(dep)\n",
"\n",
"deps = ['geoplot', 'pyobis']\n",
"\n",
"deps = [\"geoplot\", \"pyobis\"]\n",
"_colab_install_missing_deps(deps)"
]
},
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