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1. redun redun Public

   Yet another redundant workflow engine

   Python 522 45

2. insitro-research insitro-research Public

   Insitro's repository for public research code and data

   Jupyter Notebook 22 9

3. AllelicSeries AllelicSeries Public

   Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutations have increasingly large phenotypic effects.

   R 12 1

4. ChannelViT ChannelViT Public

   Channel Vision Transformers: An Image Is Worth C x 16 x 16 Words

   Python 49 6

5. EmbedGEM EmbedGEM Public

   EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery

   Python 20 1

6. sams-vae sams-vae Public

   Public Codebase supporting the paper "Modeling Cellular Perturbations with The Sparse Additive Mechanism Shift Variational Autoencoder" by Bereket & Karaletsos published in Neurips 2023

   Jupyter Notebook 9 3