Migrate to teal data@78 simplify joinkeys@main

[m7pr]

Copy of #342

Fixes #339

Part of

• Refactor the data class in teal nestdevs-tasks#41
• Simplifies JoinKeys from R6 to S3 list-like object teal.data#184

Partner of

• Replace TealData with teal_data in the docs teal.modules.clinical#845
• Update docs to use the new teal_data instead of TealData teal.modules.general#592
• https://github.com/insightsengineering/teal.modules.helios/pull/103

[github-actions]

Code Coverage Summary

Filename              Stmts    Miss  Cover    Missing
------------------  -------  ------  -------  -------------------------------------------------------------------------------------------------------------------------------
R/adtteSpec.R           168     121  27.98%   248-393
R/assaySpec.R            53      39  26.42%   106-148
R/barplot.R             169     136  19.53%   38-62, 121-257
R/boxplot.R             172     144  16.28%   39-63, 117-258
R/checkmate.R            18       9  50.00%   110-118
R/experimentSpec.R       89      56  37.08%   97, 212-279
R/forestplot.R          196     171  12.76%   57-88, 144-306
R/geneSpec.R            256     153  40.23%   154-169, 296-480
R/km.R                  188     157  16.49%   60-89, 150-301
R/pca.R                 355     272  23.38%   33-53, 161-462
R/quality.R             298     228  23.49%   18-107, 201-429
R/sampleVarSpec.R       236     104  55.93%   293, 312-321, 327-334, 336, 344-356, 358-359, 361, 364, 372-376, 378-393, 398-422, 425-429, 431, 438-448, 450-451, 459, 504-521
R/scatterplot.R         167     137  17.96%   38-62, 120-256
R/utils.R                16       0  100.00%
R/volcanoplot.R         193     163  15.54%   33-54, 109-278
R/zzz.R                   1       1  0.00%    2
TOTAL                  2575    1891  26.56%

Diff against main

Filename           Stmts    Miss  Cover
---------------  -------  ------  -------
R/barplot.R           -2      -2  +0.23%
R/boxplot.R           -2      -2  +0.19%
R/forestplot.R        -3      -3  +0.19%
R/km.R                -3      -3  +0.26%
R/pca.R               -2      -2  +0.13%
R/quality.R           -2      -2  +0.16%
R/scatterplot.R       -2      -2  +0.21%
R/volcanoplot.R       -2      -2  +0.16%
TOTAL                -18     -18  +0.18%

Results for commit: 0bc4d93

Minimum allowed coverage is 80%

♻️ This comment has been updated with latest results

[github-actions]

Unit Tests Summary

    1 files    15 suites   12s ⏱️
  56 tests   43 ✔️ 13 💤 0 ❌
538 runs  525 ✔️ 13 💤 0 ❌

Results for commit 0bc4d93.

[github-actions]

Unit Test Performance Difference

Test Suite	$Status$	Time on main	$±Time$	$±Tests$	$±Skipped$	$±Failures$	$±Errors$
adtteSpec	💔	$10.27$	$+1.60$	$+444$	$0$	$0$	$0$

Additional test case details

Test Suite	$Status$	Time on main	$±Time$	Test Case
adtteSpec	💔	$0.35$	$+1.07$	h_km_mae_to_adtte_function_also_works_when_some_ID_variables_are_factors

Results for commit 0eab84d

♻️ This comment has been updated with latest results.