Merge branch 'main' into readme

insightsengineering · Aug 29, 2024 · 27d7fd3 · 27d7fd3
2 parents 84355c2 + 1dc4bbb
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,8 +1,8 @@
 Type: Package
 Package: teal.modules.hermes
 Title: RNA-Seq Analysis Modules to Add to a Teal Application
-Version: 0.1.6.9019
-Date: 2024-08-22
+Version: 0.1.6.9020
+Date: 2024-08-29
 Authors@R: c(
     person("Daniel", "Sabanés Bové", , "[email protected]", role = c("aut", "cre")),
     person("Nikolas", "Burkoff", role = "aut"),

diff --git a/NEWS.md b/NEWS.md
@@ -1,4 +1,4 @@
-# teal.modules.hermes 0.1.6.9019
+# teal.modules.hermes 0.1.6.9020
 
 ### Miscellaneous
 * Added placeholders for `assaySpec`, `adtteSpec` and `geneSpec` inputs when no option is selected.

diff --git a/R/adtteSpec.R b/R/adtteSpec.R
@@ -16,6 +16,7 @@
 #'
 #' @export
 #' @examples
+#' library(dplyr)
 #' mae <- hermes::multi_assay_experiment
 #' adtte <- teal.modules.hermes::rADTTE %>%
 #'   dplyr::mutate(CNSR = as.logical(CNSR))
@@ -148,6 +149,8 @@ adtteSpecInput <- function(inputId, # nolint
 #' @export
 #'
 #' @examples
+#' library(dplyr)
+#'
 #' ui <- function(id) {
 #'   ns <- NS(id)
 #'

diff --git a/R/forestplot.R b/R/forestplot.R
@@ -11,6 +11,8 @@
 #' @export
 #'
 #' @examples
+#' library(dplyr)
+#'
 #' data <- teal_data()
 #' data <- within(data, {
 #'   ADTTE <- teal.modules.hermes::rADTTE %>%

diff --git a/R/km.R b/R/km.R
@@ -12,6 +12,8 @@
 #' @export
 #'
 #' @examples
+#' library(dplyr)
+#'
 #' data <- teal_data()
 #' data <- within(data, {
 #'   ADTTE <- teal.modules.hermes::rADTTE %>%

diff --git a/man/adtteSpecServer.Rd b/man/adtteSpecServer.Rd
diff --git a/man/h_km_mae_to_adtte.Rd b/man/h_km_mae_to_adtte.Rd
diff --git a/man/tm_g_forest_tte.Rd b/man/tm_g_forest_tte.Rd
diff --git a/man/tm_g_km.Rd b/man/tm_g_km.Rd