Data Analysis of Influenzanet at european level
This repository follows the workspace organization described in ifnBase package
This repository is organized with a set of projects, each in one subdirectory. A project is just a way to group scripts with a common purpose/topic. They share a common init script ("conf.R") and can share project specific scripts in a subfolder lib/ and a output directory.
A project must be independent from others and the only scripts known outside it must be "system.R" in its upper level.
The share directory contains common libraries & data shared accross projects. These libraries must be loaded with share.lib function & data using share.data.path() function.
File names must be in lower case, using underscore as separator
Configuration is expected to be in a location.R file in the root of this repository. It contains local configuration specific to this project. It can overrides system-wide or user profile config (.Rprofile file). We use this location.R because several repositories with differents projects can be hosted in the same user space.
Dependencies:
- ifnBase
- swMisc
- dplyr
- reshape2
- ggplot2
Launch R (this repository root dir as working directory) and run
source("share/install.R")
To run a script, the working directory MUST be it's own project directory (not the repository root directory but the subfolder) because all include path are relative to the main running scripts.