fixed cutadatp

cutadapt/Dockerfile

@@ -1,18 +1,30 @@
-FROM ubuntu:16.04
+FROM ubuntu:18.04
 LABEL maintainer="imperialgenomicsfacility"
 LABEL version="cutadapt_v3.1"
 LABEL description="Docker image for Cutadapt tools"
 USER root
 WORKDIR /
 RUN apt-get -y update &&   \
     apt-get install --no-install-recommends -y \
+      apt-utils \
+      locales \
+      cmake \
+      g++ \
+      libxml2-dev \
+      ca-certificates \
+      zlib1g-dev \
+      libfftw3-dev \
+      build-essential \
       python3 \
-      pip3 && \
+      python3-pip && \
     locale-gen en_US.UTF-8 && \
     dpkg-reconfigure locales && \
     apt-get purge -y --auto-remove && \
     apt-get clean && \
-    pip3 install cutadapt==3.1 && \
+    pip3 install --upgrade pip && \
+    pip install \
+      setuptools \
+      cutadapt==3.1 && \
     rm -rf /var/lib/apt/lists/*
 USER nobody
 WORKDIR /tmp