Merge pull request #79 from orebas/main

.gitignore

@@ -31,8 +31,8 @@ Manifest.toml
 *.code-workspace
 .vscode
 benchmarks/matlab*/src
-*.txt
-!benchmarks/matlab*/iqm/*/*/*/*.txt
+#*.txt
+#!benchmarks/matlab*/iqm/*/*/*/*.txt
 timecommand
 objf*.m
 sharable

ParamterEstimation/Project.toml

@@ -0,0 +1,4 @@
+[deps]
+BaryRational = "91aaffc3-5777-4842-85b7-5d3d5d6a3494"
+ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
+PrecompileTools = "aea7be01-6a6a-4083-8856-8a6e6704d82a"

Project.toml

@@ -1,11 +1,13 @@
 name = "ParameterEstimation"
 uuid = "b4cd1eb8-1e24-11e8-3319-93036a3eb9f3"
-authors = ["Soo Go <[email protected]>", "Hoon Hong <[email protected]>", "Ilia Ilmer <[email protected]>", "Alexey Ovchinnikov <[email protected]>", "Pedro Soto <[email protected]>", "Chee Yap <[email protected]>"]
-version = "0.2.1"
+authors = ["Oren Bassik <[email protected]>", "Soo Go <[email protected]>", "Hoon Hong <[email protected]>", "Ilia Ilmer <[email protected]>", "Alexey Ovchinnikov <[email protected]>", "Pedro Soto <[email protected]>", "Chee Yap <[email protected]>"]
+version = "0.3.0"
 
 [deps]
-BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf"
+ArbNumerics = "7e558dbc-694d-5a72-987c-6f4ebed21442"
+BaryRational = "91aaffc3-5777-4842-85b7-5d3d5d6a3494"
 DifferentialEquations = "0c46a032-eb83-5123-abaf-570d42b7fbaa"
+ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
 Groebner = "0b43b601-686d-58a3-8a1c-6623616c7cd4"
 HomotopyContinuation = "f213a82b-91d6-5c5d-acf7-10f1c761b327"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
@@ -14,28 +16,29 @@ Logging = "56ddb016-857b-54e1-b83d-db4d58db5568"
 ModelingToolkit = "961ee093-0014-501f-94e3-6117800e7a78"
 OrderedCollections = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
 Oscar = "f1435218-dba5-11e9-1e4d-f1a5fab5fc13"
+PrecompileTools = "aea7be01-6a6a-4083-8856-8a6e6704d82a"
 Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7"
 ProgressMeter = "92933f4c-e287-5a05-a399-4b506db050ca"
 SIAN = "cf7bdac0-b945-4905-b5ad-bc3f1a757483"
 StructuralIdentifiability = "220ca800-aa68-49bb-acd8-6037fa93a544"
+Suppressor = "fd094767-a336-5f1f-9728-57cf17d0bbfb"
 Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7"
+TaylorDiff = "b36ab563-344f-407b-a36a-4f200bebf99c"
 TaylorSeries = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea"
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 TestSetExtensions = "98d24dd4-01ad-11ea-1b02-c9a08f80db04"
 
 [compat]
-BenchmarkTools = "1"
 DifferentialEquations = "7"
-Groebner = "0.2, 0.3, 0.4, 0.5"
+Groebner = "0.2, 0.3, 0.4 - 0.5"
 HomotopyContinuation = "2"
-LinearSolve = "1, 2"
+LinearSolve = "2"
 ModelingToolkit = "8"
 OrderedCollections = "1"
-Oscar = "0.10, 0.11, 0.12, 0.13"
+Oscar = "0.10 - 0.20"
 ProgressMeter = "1"
-SIAN = "1.4.1"
-StructuralIdentifiability = "0.4.9, 0.5"
+SIAN = "1 - 1.5.10"
+StructuralIdentifiability = "0.4.9 - 0.5.30"
 Symbolics = "4, 5"
-TaylorSeries = "0.12, 0.13, 0.14, 0.15"
+TaylorSeries = "0.12 - 0.30"
 TestSetExtensions = "2"
-julia = "1"

README.md

@@ -17,17 +17,19 @@ Currently is installable via
 ```julia
 
 using Pkg
-Pkg.add("ParameterEstimation.jl")
+Pkg.add(url="https://github.com/orebas/ParameterEstimation.jl")
 ```
 
-or
+The production version of this fork is installable via
 
 ```julia
 
 using Pkg
-Pkg.add(url="https://github.com/iliailmer/ParameterEstimation.jl")
+Pkg.add("ParameterEstimation.jl")
 ```
 
+
+
 ## Toy Example
 
 ```julia