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@idekerlab

UC, San Diego Trey Ideker Lab

Bioinformatics software projects developed by UCSD Trey Ideker lab

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  1. DCell DCell Public

    DCell browser and gene deletion simulator

    JavaScript 122 34

  2. hiview hiview Public

    HiView: the universal viewer for hierarchical data

    JavaScript 16 7

  3. vizbi-2015 vizbi-2015 Public

    Sample data and notebooks for VIZBI 2015 tutorial session

    5 12

  4. Network_Evaluation_Tools Network_Evaluation_Tools Public

    Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.

    Jupyter Notebook 32 19

  5. pyNBS pyNBS Public

    Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)

    Jupyter Notebook 38 22

Repositories

Showing 10 of 175 repositories
  • test_cyweb_service_app Public
    idekerlab/test_cyweb_service_app’s past year of commit activity
    Python 1 0 0 0 Updated Jan 7, 2025
  • cookiecutter-musicpypackage Public
    idekerlab/cookiecutter-musicpypackage’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Jan 6, 2025
  • G2PT Public
    idekerlab/G2PT’s past year of commit activity
    Python 8 2 1 0 Updated Jan 6, 2025
  • cellmaps_utils Public
    idekerlab/cellmaps_utils’s past year of commit activity
    Python 1 MIT 0 4 0 Updated Jan 6, 2025
  • cellmaps_generate_hierarchy Public
    idekerlab/cellmaps_generate_hierarchy’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Jan 6, 2025
  • cellmaps_hierarchyeval Public

    Code for hierarchy evaluation

    idekerlab/cellmaps_hierarchyeval’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 6, 2025
  • cellmaps_imagedownloader Public
    idekerlab/cellmaps_imagedownloader’s past year of commit activity
    Python 0 MIT 0 5 0 Updated Jan 6, 2025
  • cellmaps_vnn Public
    idekerlab/cellmaps_vnn’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 5, 2025
  • drugcell-landing-page Public
    idekerlab/drugcell-landing-page’s past year of commit activity
    JavaScript 0 MIT 1 0 2 Updated Jan 4, 2025
  • drugcell-analysis-webapp Public
    idekerlab/drugcell-analysis-webapp’s past year of commit activity
    TypeScript 0 0 0 0 Updated Jan 4, 2025
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