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deploy: b7b86a9
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bellonet committed Sep 23, 2024
1 parent c7cac30 commit 80ca631
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21 changes: 13 additions & 8 deletions img/flowcahrt.txt
Original file line number Diff line number Diff line change
@@ -1,24 +1,29 @@
digraph ImageRegistrationGuideline {
rankdir=TB;
node [shape=rectangle, style=rounded, fontsize=10, fontname="Helvetica"];
nodesep=0.1;
ranksep=0.1;
node [shape=rectangle, style=rounded, fontsize=12, fontname="Helvetica"];

size="9,9.7"; // Width=8 inches, Height=10 inches
ratio=compress; // Adjust the ratio to fit the height

// Start Node
start [label="Start", shape=ellipse, style=filled, fillcolor=lightgreen];

// Preprocessing Decision
preprocessing_check [label="Is preprocessing needed?", shape=diamond, style=filled, fillcolor=lightblue];
preprocessing_check [label="Is preprocessing needed?", shape=sqaure, style=filled, fillcolor=lightblue];

// Preprocessing Steps
preprocessing_steps [label="Correct Intensity, Resize, or Segment.."];

// Deep Learning Decision
deep_learning_check [label="Do you have the necessary expertise,\ncomputational resources,\nand perhaps training data for Deep Learning?", shape=diamond, style=filled, fillcolor=lightblue];
deep_learning_check [label="Do you have the necessary expertise,\ncomputational resources,\nand perhaps training data for Deep Learning?", shape=sqaure, style=filled, fillcolor=lightblue];

// Deep Learning Registration
deep_learning_registration [label="Apply Deep Learning-Based Registration\n(e.g., VoxelMorph, DeepReg)", shape=ellipse, style=filled, fillcolor=lightgrey];

// Step 1: Are the images very similar?
similarity_check [label="Are the images very similar?\n(Minimal transformation)", shape=diamond, style=filled, fillcolor=lightblue];
similarity_check [label="Are the images very similar?\n(Minimal transformation)", shape=sqaure, style=filled, fillcolor=lightblue];

// Paths from similarity_check
intensity_based [label="Use Intensity-Based Registration\n(e.g., Cross-Correlation)"];
Expand All @@ -27,10 +32,10 @@ digraph ImageRegistrationGuideline {
retake_images [label="Retake Images with Extrinsic Landmarks\nor Improved Features", shape=ellipse, style=filled, fillcolor=lightgrey];

// Transformation Type Decision
transformation_type [label="Select Transformation Type", shape=diamond, style=filled, fillcolor=lightblue];
transformation_type [label="Select Transformation Type", shape=sqaure, style=filled, fillcolor=lightblue];

// Local Deformations Decision
local_deformations [label="Are local deformations present?", shape=diamond, style=filled, fillcolor=lightblue];
local_deformations [label="Are local deformations present?", shape=sqaure, style=filled, fillcolor=lightblue];

// Transformation Methods
rigid_transformation [label="Calculate and Apply Rigid, Affine, or Perspective Transformation"];
Expand Down Expand Up @@ -95,6 +100,6 @@ digraph ImageRegistrationGuideline {
retake_images -> final_step [style=invis]; // Invisible edge to maintain graph structure

// Styling for Clarity
edge [fontsize=9, fontname="Helvetica"];
node [fontsize=10, fontname="Helvetica"];
edge [fontsize=12, fontname="Helvetica"];
node [fontsize=12, fontname="Helvetica"];
}
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206 changes: 103 additions & 103 deletions img/flowchart.svg
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11 changes: 5 additions & 6 deletions index.html

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15 changes: 7 additions & 8 deletions reveal/dist/theme/white-hi.css
Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@ section.has-dark-background, section.has-dark-background h1, section.has-dark-ba
:root {
--r-background-color: #fff;
--r-main-font: 'Urbanist', Helvetica, sans-serif;
--r-main-font-size: 2vw;
--r-main-font-size: 1.5vw;
--r-main-color: #000;
--r-block-margin: 1.5vw 2vw;
--r-heading-margin: 2vw 1.5vw 1vw 2vw;
Expand All @@ -26,10 +26,10 @@ section.has-dark-background, section.has-dark-background h1, section.has-dark-ba
--r-heading-text-shadow: none;
--r-heading-font-weight: 600;
--r-heading1-text-shadow: none;
--r-heading1-size: 3.6vw;
--r-heading2-size: 3.6vw;
--r-heading3-size: 2.3vw;
--r-heading4-size: 2.3vw;
--r-heading1-size: 3.2vw;
--r-heading2-size: 3.2vw;
--r-heading3-size: 2vw;
--r-heading4-size: 2vw;
--r-code-font: monospace;
--r-link-color: #e1462c;
--r-link-color-dark: #e1462c;
Expand Down Expand Up @@ -67,7 +67,6 @@ section.has-dark-background, section.has-dark-background h1, section.has-dark-ba
.reveal .slides {
display: flex;
text-align: left;
flex: 1;
}

.reveal .slides section,
Expand Down Expand Up @@ -301,11 +300,11 @@ section.subsection h1, section.subsection h2 {
.reveal ul {
display: inline-block;
text-align: left;
margin: 1.5vw 2vw;
margin: 1vw 2vw;
}

.reveal ul li {
margin-bottom: 0.5vw;
margin-bottom: 0.3vw;
}

.reveal ol {
Expand Down

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