Irys-scaffolding tools Version 1.1.0

Pipelines with sample data sets:

Pipeline 1: Sewing Machine pipeline: iteratively super scaffold genome FASTA files with BioNano genome maps using stitch.pl
Pipeline 2: "Raw data-to-finished assembly and assembly analysis" pipeline for BioNano molecule maps with a sequence-based genome FASTA
Pipeline 3: "Raw data-to-finished de novo assembly and assembly analysis" pipeline for BioNano molecule maps

Includes:

AssembleIrysXeonPhi.pl Version 1.1.0
sewing_machine.pl Version 1.0.4
stitch.pl Version 1.4.7
bnx_stats.pl Version 1.2
cmap_stats.pl Version 1.0
xmap_stats.pl Version 1.0
nick_density.pl Version 1.1

Irys-scaffolding tools Version 1.0.0

Pipelines with sample data sets:

Pipeline 1: Sewing Machine pipeline: iteratively super scaffold genome FASTA files with BioNano genome maps using stitch.pl
Pipeline 2: "Raw data-to-finished assembly and assembly analysis" pipeline for BioNano molecule maps with a sequence-based genome FASTA
Pipeline 3: "Raw data-to-finished de novo assembly and assembly analysis" pipeline for BioNano molecule maps

Includes:

AssembleIrysXeonPhi.pl Version 1.0.0
sewing_machine.pl Version 1.0.0
stitch.pl Version 1.4.7
bnx_stats.pl Version 1.1
cmap_stats.pl Version 1.0
xmap_stats.pl Version 1.0