Update docs build

hyperspy · Apr 1, 2024 · b473fed · b473fed
1 parent a425cb9
commit b473fed
Show file tree

Hide file tree

Showing 17 changed files with 62 additions and 60 deletions.
diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 4c6ba299de24bf3166eea6197cc5783d
+config: 70febfb360ae6fb36854d484a9ff6f7d
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip b/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip
diff --git a/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip b/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip
diff --git a/_images/sphx_glr_simple_arctan_fit_001.png b/_images/sphx_glr_simple_arctan_fit_001.png
diff --git a/_images/sphx_glr_simple_arctan_fit_thumb.png b/_images/sphx_glr_simple_arctan_fit_thumb.png
diff --git a/_sources/auto_examples/model_fitting/EELS_curve_fitting.rst.txt b/_sources/auto_examples/model_fitting/EELS_curve_fitting.rst.txt
@@ -38,7 +38,7 @@ png file.
 
  .. code-block:: none
 
-      0%|                                              | 0.00/42.3M [00:00<?, ?B/s]      0%|                                     | 15.4k/42.3M [00:00<08:14, 85.4kB/s]      0%|                                      | 48.1k/42.3M [00:00<04:20, 162kB/s]      0%|                                       | 124k/42.3M [00:00<02:18, 304kB/s]      1%|▎                                      | 275k/42.3M [00:00<01:15, 556kB/s]      1%|▌                                     | 568k/42.3M [00:00<00:41, 1.01MB/s]      3%|█                                    | 1.16M/42.3M [00:00<00:21, 1.91MB/s]      6%|██                                   | 2.35M/42.3M [00:01<00:10, 3.67MB/s]     11%|████▏                                | 4.72M/42.3M [00:01<00:05, 7.15MB/s]     18%|██████▊                              | 7.71M/42.3M [00:01<00:03, 10.7MB/s]     24%|████████▉                            | 10.3M/42.3M [00:01<00:02, 12.3MB/s]     30%|███████████▏                         | 12.9M/42.3M [00:01<00:02, 10.3MB/s]     38%|█████████████▉                       | 16.0M/42.3M [00:02<00:02, 12.5MB/s]     43%|███████████████▉                     | 18.2M/42.3M [00:02<00:01, 12.9MB/s]     49%|██████████████████▏                  | 20.8M/42.3M [00:02<00:01, 13.7MB/s]     56%|████████████████████▋                | 23.6M/42.3M [00:02<00:01, 14.7MB/s]     62%|███████████████████████              | 26.4M/42.3M [00:02<00:01, 15.4MB/s]     69%|█████████████████████████▌           | 29.2M/42.3M [00:02<00:00, 15.9MB/s]     75%|███████████████████████████▊         | 31.8M/42.3M [00:03<00:00, 16.1MB/s]     82%|██████████████████████████████▎      | 34.7M/42.3M [00:03<00:00, 16.5MB/s]     88%|████████████████████████████████▋    | 37.4M/42.3M [00:03<00:00, 16.6MB/s]     95%|███████████████████████████████████▏ | 40.2M/42.3M [00:03<00:00, 16.8MB/s]      0%|                                              | 0.00/42.3M [00:00<?, ?B/s]    100%|██████████████████████████████████████| 42.3M/42.3M [00:00<00:00, 197GB/s]
+      0%|                                              | 0.00/42.3M [00:00<?, ?B/s]      0%|                                      | 14.3k/42.3M [00:00<06:50, 103kB/s]      0%|                                      | 53.2k/42.3M [00:00<03:00, 234kB/s]      0%|                                       | 117k/42.3M [00:00<01:51, 378kB/s]      1%|▏                                      | 241k/42.3M [00:00<01:03, 657kB/s]      1%|▍                                     | 523k/42.3M [00:00<00:31, 1.32MB/s]      3%|▉                                    | 1.06M/42.3M [00:00<00:16, 2.49MB/s]      5%|█▊                                   | 2.14M/42.3M [00:00<00:08, 4.81MB/s]     10%|███▊                                 | 4.30M/42.3M [00:00<00:04, 9.41MB/s]     16%|██████                               | 6.95M/42.3M [00:01<00:02, 13.9MB/s]     22%|████████▎                            | 9.44M/42.3M [00:01<00:01, 17.0MB/s]     26%|█████████▊                           | 11.2M/42.3M [00:01<00:01, 17.0MB/s]     31%|███████████▌                         | 13.3M/42.3M [00:01<00:01, 17.9MB/s]     37%|█████████████▊                       | 15.7M/42.3M [00:01<00:01, 19.2MB/s]     43%|███████████████▉                     | 18.2M/42.3M [00:01<00:01, 19.9MB/s]     49%|██████████████████                   | 20.7M/42.3M [00:01<00:01, 20.7MB/s]     55%|████████████████████▏                | 23.1M/42.3M [00:01<00:00, 21.1MB/s]     60%|██████████████████████▍              | 25.6M/42.3M [00:01<00:00, 21.3MB/s]     66%|████████████████████████▌            | 28.1M/42.3M [00:02<00:00, 21.7MB/s]     72%|██████████████████████████▊          | 30.6M/42.3M [00:02<00:00, 21.8MB/s]     78%|████████████████████████████▉        | 33.0M/42.3M [00:02<00:00, 21.9MB/s]     84%|███████████████████████████████      | 35.5M/42.3M [00:02<00:00, 22.0MB/s]     90%|█████████████████████████████████▎   | 38.1M/42.3M [00:02<00:00, 22.1MB/s]     96%|███████████████████████████████████▍ | 40.5M/42.3M [00:02<00:00, 22.0MB/s]      0%|                                              | 0.00/42.3M [00:00<?, ?B/s]    100%|██████████████████████████████████████| 42.3M/42.3M [00:00<00:00, 260GB/s]
 
 
 
@@ -68,7 +68,7 @@ png file.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 10.390 seconds)
+   **Total running time of the script:** (0 minutes 8.465 seconds)
 
 
 .. _sphx_glr_download_auto_examples_model_fitting_EELS_curve_fitting.py:

diff --git a/_sources/auto_examples/model_fitting/plot_residual.rst.txt b/_sources/auto_examples/model_fitting/plot_residual.rst.txt
@@ -110,15 +110,15 @@ Fit for all navigation positions:
 
  .. code-block:: none
 
-    Exception ignored in: <function tqdm.__del__ at 0x7f900866e520>
+    Exception ignored in: <function tqdm.__del__ at 0x7fd95490e8e0>
     Traceback (most recent call last):
       File "/opt/hostedtoolcache/Python/3.11.8/x64/lib/python3.11/site-packages/tqdm/std.py", line 1148, in __del__
         self.close()
       File "/opt/hostedtoolcache/Python/3.11.8/x64/lib/python3.11/site-packages/tqdm/notebook.py", line 279, in close
         self.disp(bar_style='danger', check_delay=False)
         ^^^^^^^^^
     AttributeError: 'tqdm_notebook' object has no attribute 'disp'
-      0%|          | 0/10 [00:00<?, ?it/s]    100%|██████████| 10/10 [00:00<00:00, 1481.25it/s]
+      0%|          | 0/10 [00:00<?, ?it/s]    100%|██████████| 10/10 [00:00<00:00, 1476.92it/s]
 
 
 
@@ -164,7 +164,7 @@ sphinx_gallery_thumbnail_number = 2
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 0.482 seconds)
+   **Total running time of the script:** (0 minutes 0.478 seconds)
 
 
 .. _sphx_glr_download_auto_examples_model_fitting_plot_residual.py:

diff --git a/_sources/auto_examples/model_fitting/sg_execution_times.rst.txt b/_sources/auto_examples/model_fitting/sg_execution_times.rst.txt
@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**00:11.211** total execution time for 3 files **from auto_examples/model_fitting**:
+**00:09.306** total execution time for 3 files **from auto_examples/model_fitting**:
 
 .. container::
 
@@ -33,11 +33,11 @@ Computation times
      - Time
      - Mem (MB)
    * - :ref:`sphx_glr_auto_examples_model_fitting_EELS_curve_fitting.py` (``EELS_curve_fitting.py``)
-     - 00:10.390
+     - 00:08.465
      - 0.0
    * - :ref:`sphx_glr_auto_examples_model_fitting_plot_residual.py` (``plot_residual.py``)
-     - 00:00.482
+     - 00:00.478
      - 0.0
    * - :ref:`sphx_glr_auto_examples_model_fitting_simple_arctan_fit.py` (``simple_arctan_fit.py``)
-     - 00:00.338
+     - 00:00.362
      - 0.0
diff --git a/_sources/auto_examples/model_fitting/simple_arctan_fit.rst.txt b/_sources/auto_examples/model_fitting/simple_arctan_fit.rst.txt
@@ -42,9 +42,9 @@ Fit an arctan function.
     Active: True
     Parameter Name |    Free |      Value |        Std |        Min |        Max | Linear
     ============== | ======= | ========== | ========== | ========== | ========== | ======
-                 A |    True | 1.00163912 | 0.00213728 |       None |       None |   True
-                 k |    True | 0.91851991 | 0.07431677 |       None |       None |  False
-                x0 |    True | -0.0581319 | 0.08302197 |       None |       None |  False
+                 A |    True | 0.99908591 | 0.00216039 |       None |       None |   True
+                 k |    True | 0.88892233 | 0.07163712 |       None |       None |  False
+                x0 |    True | -0.0035535 | 0.08550121 |       None |       None |  False
 
 
 
@@ -91,7 +91,7 @@ Fit an arctan function.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 0.338 seconds)
+   **Total running time of the script:** (0 minutes 0.362 seconds)
 
 
 .. _sphx_glr_download_auto_examples_model_fitting_simple_arctan_fit.py:

diff --git a/_sources/sg_execution_times.rst.txt b/_sources/sg_execution_times.rst.txt
@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**00:11.211** total execution time for 3 files **from all galleries**:
+**00:09.306** total execution time for 3 files **from all galleries**:
 
 .. container::
 
@@ -33,11 +33,11 @@ Computation times
      - Time
      - Mem (MB)
    * - :ref:`sphx_glr_auto_examples_model_fitting_EELS_curve_fitting.py` (``../examples/model_fitting/EELS_curve_fitting.py``)
-     - 00:10.390
+     - 00:08.465
      - 0.0
    * - :ref:`sphx_glr_auto_examples_model_fitting_plot_residual.py` (``../examples/model_fitting/plot_residual.py``)
-     - 00:00.482
+     - 00:00.478
      - 0.0
    * - :ref:`sphx_glr_auto_examples_model_fitting_simple_arctan_fit.py` (``../examples/model_fitting/simple_arctan_fit.py``)
-     - 00:00.338
+     - 00:00.362
      - 0.0
diff --git a/auto_examples/model_fitting/EELS_curve_fitting.html b/auto_examples/model_fitting/EELS_curve_fitting.html
@@ -457,29 +457,31 @@
 <p>Performs curve fitting to an EELS spectrum, plots the result and saves it as
 png file.</p>
 <img src="../../_images/sphx_glr_EELS_curve_fitting_001.png" srcset="../../_images/sphx_glr_EELS_curve_fitting_001.png" alt="coreloss_spectrum Signal" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>  0%|                                              | 0.00/42.3M [00:00&lt;?, ?B/s]
-  0%|                                     | 15.4k/42.3M [00:00&lt;08:14, 85.4kB/s]
-  0%|                                      | 48.1k/42.3M [00:00&lt;04:20, 162kB/s]
-  0%|                                       | 124k/42.3M [00:00&lt;02:18, 304kB/s]
-  1%|▎                                      | 275k/42.3M [00:00&lt;01:15, 556kB/s]
-  1%|▌                                     | 568k/42.3M [00:00&lt;00:41, 1.01MB/s]
-  3%|█                                    | 1.16M/42.3M [00:00&lt;00:21, 1.91MB/s]
-  6%|██                                   | 2.35M/42.3M [00:01&lt;00:10, 3.67MB/s]
- 11%|████▏                                | 4.72M/42.3M [00:01&lt;00:05, 7.15MB/s]
- 18%|██████▊                              | 7.71M/42.3M [00:01&lt;00:03, 10.7MB/s]
- 24%|████████▉                            | 10.3M/42.3M [00:01&lt;00:02, 12.3MB/s]
- 30%|███████████▏                         | 12.9M/42.3M [00:01&lt;00:02, 10.3MB/s]
- 38%|█████████████▉                       | 16.0M/42.3M [00:02&lt;00:02, 12.5MB/s]
- 43%|███████████████▉                     | 18.2M/42.3M [00:02&lt;00:01, 12.9MB/s]
- 49%|██████████████████▏                  | 20.8M/42.3M [00:02&lt;00:01, 13.7MB/s]
- 56%|████████████████████▋                | 23.6M/42.3M [00:02&lt;00:01, 14.7MB/s]
- 62%|███████████████████████              | 26.4M/42.3M [00:02&lt;00:01, 15.4MB/s]
- 69%|█████████████████████████▌           | 29.2M/42.3M [00:02&lt;00:00, 15.9MB/s]
- 75%|███████████████████████████▊         | 31.8M/42.3M [00:03&lt;00:00, 16.1MB/s]
- 82%|██████████████████████████████▎      | 34.7M/42.3M [00:03&lt;00:00, 16.5MB/s]
- 88%|████████████████████████████████▋    | 37.4M/42.3M [00:03&lt;00:00, 16.6MB/s]
- 95%|███████████████████████████████████▏ | 40.2M/42.3M [00:03&lt;00:00, 16.8MB/s]
+  0%|                                      | 14.3k/42.3M [00:00&lt;06:50, 103kB/s]
+  0%|                                      | 53.2k/42.3M [00:00&lt;03:00, 234kB/s]
+  0%|                                       | 117k/42.3M [00:00&lt;01:51, 378kB/s]
+  1%|▏                                      | 241k/42.3M [00:00&lt;01:03, 657kB/s]
+  1%|▍                                     | 523k/42.3M [00:00&lt;00:31, 1.32MB/s]
+  3%|▉                                    | 1.06M/42.3M [00:00&lt;00:16, 2.49MB/s]
+  5%|█▊                                   | 2.14M/42.3M [00:00&lt;00:08, 4.81MB/s]
+ 10%|███▊                                 | 4.30M/42.3M [00:00&lt;00:04, 9.41MB/s]
+ 16%|██████                               | 6.95M/42.3M [00:01&lt;00:02, 13.9MB/s]
+ 22%|████████▎                            | 9.44M/42.3M [00:01&lt;00:01, 17.0MB/s]
+ 26%|█████████▊                           | 11.2M/42.3M [00:01&lt;00:01, 17.0MB/s]
+ 31%|███████████▌                         | 13.3M/42.3M [00:01&lt;00:01, 17.9MB/s]
+ 37%|█████████████▊                       | 15.7M/42.3M [00:01&lt;00:01, 19.2MB/s]
+ 43%|███████████████▉                     | 18.2M/42.3M [00:01&lt;00:01, 19.9MB/s]
+ 49%|██████████████████                   | 20.7M/42.3M [00:01&lt;00:01, 20.7MB/s]
+ 55%|████████████████████▏                | 23.1M/42.3M [00:01&lt;00:00, 21.1MB/s]
+ 60%|██████████████████████▍              | 25.6M/42.3M [00:01&lt;00:00, 21.3MB/s]
+ 66%|████████████████████████▌            | 28.1M/42.3M [00:02&lt;00:00, 21.7MB/s]
+ 72%|██████████████████████████▊          | 30.6M/42.3M [00:02&lt;00:00, 21.8MB/s]
+ 78%|████████████████████████████▉        | 33.0M/42.3M [00:02&lt;00:00, 21.9MB/s]
+ 84%|███████████████████████████████      | 35.5M/42.3M [00:02&lt;00:00, 22.0MB/s]
+ 90%|█████████████████████████████████▎   | 38.1M/42.3M [00:02&lt;00:00, 22.1MB/s]
+ 96%|███████████████████████████████████▍ | 40.5M/42.3M [00:02&lt;00:00, 22.0MB/s]
   0%|                                              | 0.00/42.3M [00:00&lt;?, ?B/s]
-100%|██████████████████████████████████████| 42.3M/42.3M [00:00&lt;00:00, 197GB/s]
+100%|██████████████████████████████████████| 42.3M/42.3M [00:00&lt;00:00, 260GB/s]
 </pre></div>
 </div>
 <div class="line-block">
@@ -501,7 +503,7 @@
 <a href="https://hyperspy.org/hyperspy-doc/dev/reference/base_classes/model/model1d.html#hyperspy.models.model1d.Model1D.plot" title="hyperspy.models.model1d.Model1D.plot" class="sphx-glr-backref-module-hyperspy-models-model1d sphx-glr-backref-type-py-method"><span class="n">m</span><span class="o">.</span><span class="n">plot</span></a><span class="p">()</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 10.390 seconds)</p>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 8.465 seconds)</p>
 <div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-model-fitting-eels-curve-fitting-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/037b5aa4752b41748abf69bba9d1cbe4/EELS_curve_fitting.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">EELS_curve_fitting.ipynb</span></code></a></p>

diff --git a/auto_examples/model_fitting/plot_residual.html b/auto_examples/model_fitting/plot_residual.html
@@ -478,7 +478,7 @@
 <div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><a href="https://hyperspy.org/hyperspy-doc/dev/reference/base_classes/model/basemodel.html#hyperspy.model.BaseModel.multifit" title="hyperspy.model.BaseModel.multifit" class="sphx-glr-backref-module-hyperspy-model sphx-glr-backref-type-py-method"><span class="n">m</span><span class="o">.</span><span class="n">multifit</span></a><span class="p">()</span>
 </pre></div>
 </div>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Exception ignored in: &lt;function tqdm.__del__ at 0x7f900866e520&gt;
+<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Exception ignored in: &lt;function tqdm.__del__ at 0x7fd95490e8e0&gt;
 Traceback (most recent call last):
   File &quot;/opt/hostedtoolcache/Python/3.11.8/x64/lib/python3.11/site-packages/tqdm/std.py&quot;, line 1148, in __del__
     self.close()
@@ -488,7 +488,7 @@
 AttributeError: &#39;tqdm_notebook&#39; object has no attribute &#39;disp&#39;
 
   0%|          | 0/10 [00:00&lt;?, ?it/s]
-100%|██████████| 10/10 [00:00&lt;00:00, 1481.25it/s]
+100%|██████████| 10/10 [00:00&lt;00:00, 1476.92it/s]
 </pre></div>
 </div>
 <p>Plot the fitted model with residual:</p>
@@ -500,7 +500,7 @@
 <li><img src="../../_images/sphx_glr_plot_residual_002.png" srcset="../../_images/sphx_glr_plot_residual_002.png" alt="Signal" class = "sphx-glr-multi-img"/></li>
 </ul>
 <p>sphinx_gallery_thumbnail_number = 2</p>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.482 seconds)</p>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.478 seconds)</p>
 <div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-model-fitting-plot-residual-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/971c2906ad663020c2e6701928a24c9a/plot_residual.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_residual.ipynb</span></code></a></p>