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hyperspy · Dec 3, 2023 · a0278c9 · a0278c9
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diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 4ca2f809cc2775ad11cb4e5b110f0357
+config: 744df6b37de528a479b7bda40ea2ec6b
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip b/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip
diff --git a/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip b/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip
diff --git a/_images/sphx_glr_simple_arctan_fit_001.png b/_images/sphx_glr_simple_arctan_fit_001.png
diff --git a/_images/sphx_glr_simple_arctan_fit_thumb.png b/_images/sphx_glr_simple_arctan_fit_thumb.png
diff --git a/_sources/auto_examples/model_fitting/EELS_curve_fitting.rst.txt b/_sources/auto_examples/model_fitting/EELS_curve_fitting.rst.txt
@@ -38,7 +38,7 @@ png file.
 
  .. code-block:: none
 
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@@ -68,7 +68,7 @@ png file.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 8.179 seconds)
+   **Total running time of the script:** (0 minutes 8.741 seconds)
 
 
 .. _sphx_glr_download_auto_examples_model_fitting_EELS_curve_fitting.py:

diff --git a/_sources/auto_examples/model_fitting/plot_residual.rst.txt b/_sources/auto_examples/model_fitting/plot_residual.rst.txt
@@ -110,15 +110,15 @@ Fit for all navigation positions:
 
  .. code-block:: none
 
-    Exception ignored in: <function tqdm.__del__ at 0x7f2154478900>
+    Exception ignored in: <function tqdm.__del__ at 0x7f5b13218860>
     Traceback (most recent call last):
       File "/opt/hostedtoolcache/Python/3.11.6/x64/lib/python3.11/site-packages/tqdm/std.py", line 1149, in __del__
         self.close()
       File "/opt/hostedtoolcache/Python/3.11.6/x64/lib/python3.11/site-packages/tqdm/notebook.py", line 278, in close
         self.disp(bar_style='danger', check_delay=False)
         ^^^^^^^^^
     AttributeError: 'tqdm_notebook' object has no attribute 'disp'
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+      0%|          | 0/10 [00:00<?, ?it/s]    100%|██████████| 10/10 [00:00<00:00, 1469.11it/s]
 
 
 
@@ -164,7 +164,7 @@ sphinx_gallery_thumbnail_number = 2
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 0.516 seconds)
+   **Total running time of the script:** (0 minutes 0.567 seconds)
 
 
 .. _sphx_glr_download_auto_examples_model_fitting_plot_residual.py:

diff --git a/_sources/auto_examples/model_fitting/sg_execution_times.rst.txt b/_sources/auto_examples/model_fitting/sg_execution_times.rst.txt
@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**00:09.061** total execution time for 3 files **from auto_examples/model_fitting**:
+**00:09.673** total execution time for 3 files **from auto_examples/model_fitting**:
 
 .. container::
 
@@ -33,10 +33,10 @@ Computation times
      - Time
      - Mem (MB)
    * - :ref:`sphx_glr_auto_examples_model_fitting_EELS_curve_fitting.py` (``EELS_curve_fitting.py``)
-     - 00:08.179
+     - 00:08.741
      - 0.0
    * - :ref:`sphx_glr_auto_examples_model_fitting_plot_residual.py` (``plot_residual.py``)
-     - 00:00.516
+     - 00:00.567
      - 0.0
    * - :ref:`sphx_glr_auto_examples_model_fitting_simple_arctan_fit.py` (``simple_arctan_fit.py``)
      - 00:00.366

diff --git a/_sources/auto_examples/model_fitting/simple_arctan_fit.rst.txt b/_sources/auto_examples/model_fitting/simple_arctan_fit.rst.txt
@@ -42,9 +42,9 @@ Fit an arctan function.
     Active: True
     Parameter Name |    Free |      Value |        Std |        Min |        Max | Linear
     ============== | ======= | ========== | ========== | ========== | ========== | ======
-                 A |    True | 1.00220217 | 0.00212701 |       None |       None |   True
-                 k |    True | 1.09957149 | 0.09786674 |       None |       None |  False
-                x0 |    True | -0.0289328 | 0.07487562 |       None |       None |  False
+                 A |    True | 0.99800002 | 0.00207217 |       None |       None |   True
+                 k |    True | 0.96678408 | 0.07821500 |       None |       None |  False
+                x0 |    True | 0.08717193 | 0.07874943 |       None |       None |  False
 
 
 

diff --git a/_sources/sg_execution_times.rst.txt b/_sources/sg_execution_times.rst.txt
@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**00:09.061** total execution time for 3 files **from all galleries**:
+**00:09.673** total execution time for 3 files **from all galleries**:
 
 .. container::
 
@@ -33,10 +33,10 @@ Computation times
      - Time
      - Mem (MB)
    * - :ref:`sphx_glr_auto_examples_model_fitting_EELS_curve_fitting.py` (``../examples/model_fitting/EELS_curve_fitting.py``)
-     - 00:08.179
+     - 00:08.741
      - 0.0
    * - :ref:`sphx_glr_auto_examples_model_fitting_plot_residual.py` (``../examples/model_fitting/plot_residual.py``)
-     - 00:00.516
+     - 00:00.567
      - 0.0
    * - :ref:`sphx_glr_auto_examples_model_fitting_simple_arctan_fit.py` (``../examples/model_fitting/simple_arctan_fit.py``)
      - 00:00.366

diff --git a/auto_examples/model_fitting/EELS_curve_fitting.html b/auto_examples/model_fitting/EELS_curve_fitting.html
@@ -483,26 +483,30 @@
 <p>Performs curve fitting to an EELS spectrum, plots the result and saves it as
 png file.</p>
 <img src="../../_images/sphx_glr_EELS_curve_fitting_001.png" srcset="../../_images/sphx_glr_EELS_curve_fitting_001.png" alt="coreloss_spectrum Signal" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>  0%|                                              | 0.00/42.3M [00:00&lt;?, ?B/s]
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 </pre></div>
 </div>
 <div class="line-block">
@@ -524,7 +528,7 @@
 <a href="https://hyperspy.org/hyperspy-doc/dev/reference/base_classes/model/model1d.html#hyperspy.models.model1d.Model1D.plot" title="hyperspy.models.model1d.Model1D.plot" class="sphx-glr-backref-module-hyperspy-models-model1d sphx-glr-backref-type-py-method"><span class="n">m</span><span class="o">.</span><span class="n">plot</span></a><span class="p">()</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 8.179 seconds)</p>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 8.741 seconds)</p>
 <div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-model-fitting-eels-curve-fitting-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/037b5aa4752b41748abf69bba9d1cbe4/EELS_curve_fitting.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">EELS_curve_fitting.ipynb</span></code></a></p>

diff --git a/auto_examples/model_fitting/plot_residual.html b/auto_examples/model_fitting/plot_residual.html
@@ -504,7 +504,7 @@
 <div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><a href="https://hyperspy.org/hyperspy-doc/dev/reference/base_classes/model/basemodel.html#hyperspy.model.BaseModel.multifit" title="hyperspy.model.BaseModel.multifit" class="sphx-glr-backref-module-hyperspy-model sphx-glr-backref-type-py-method"><span class="n">m</span><span class="o">.</span><span class="n">multifit</span></a><span class="p">()</span>
 </pre></div>
 </div>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Exception ignored in: &lt;function tqdm.__del__ at 0x7f2154478900&gt;
+<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Exception ignored in: &lt;function tqdm.__del__ at 0x7f5b13218860&gt;
 Traceback (most recent call last):
   File &quot;/opt/hostedtoolcache/Python/3.11.6/x64/lib/python3.11/site-packages/tqdm/std.py&quot;, line 1149, in __del__
     self.close()
@@ -514,7 +514,7 @@
 AttributeError: &#39;tqdm_notebook&#39; object has no attribute &#39;disp&#39;
 
   0%|          | 0/10 [00:00&lt;?, ?it/s]
-100%|██████████| 10/10 [00:00&lt;00:00, 1453.18it/s]
+100%|██████████| 10/10 [00:00&lt;00:00, 1469.11it/s]
 </pre></div>
 </div>
 <p>Plot the fitted model with residual:</p>
@@ -526,7 +526,7 @@
 <li><img src="../../_images/sphx_glr_plot_residual_002.png" srcset="../../_images/sphx_glr_plot_residual_002.png" alt="Signal" class = "sphx-glr-multi-img"/></li>
 </ul>
 <p>sphinx_gallery_thumbnail_number = 2</p>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.516 seconds)</p>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.567 seconds)</p>
 <div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-model-fitting-plot-residual-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/971c2906ad663020c2e6701928a24c9a/plot_residual.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_residual.ipynb</span></code></a></p>

diff --git a/auto_examples/model_fitting/sg_execution_times.html b/auto_examples/model_fitting/sg_execution_times.html
@@ -450,7 +450,7 @@
 
   <section id="computation-times">
 <span id="sphx-glr-auto-examples-model-fitting-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Link to this heading">#</a></h1>
-<p><strong>00:09.061</strong> total execution time for 3 files <strong>from auto_examples/model_fitting</strong>:</p>
+<p><strong>00:09.673</strong> total execution time for 3 files <strong>from auto_examples/model_fitting</strong>:</p>
 <div class="docutils container">
 <style scoped>
 <link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
@@ -472,11 +472,11 @@
 </thead>
 <tbody>
 <tr class="row-even"><td><p><a class="reference internal" href="EELS_curve_fitting.html#sphx-glr-auto-examples-model-fitting-eels-curve-fitting-py"><span class="std std-ref">EELS curve fitting</span></a> (<code class="docutils literal notranslate"><span class="pre">EELS_curve_fitting.py</span></code>)</p></td>
-<td><p>00:08.179</p></td>
+<td><p>00:08.741</p></td>
 <td><p>0.0</p></td>
 </tr>
 <tr class="row-odd"><td><p><a class="reference internal" href="plot_residual.html#sphx-glr-auto-examples-model-fitting-plot-residual-py"><span class="std std-ref">Plot Residual</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_residual.py</span></code>)</p></td>
-<td><p>00:00.516</p></td>
+<td><p>00:00.567</p></td>
 <td><p>0.0</p></td>
 </tr>
 <tr class="row-even"><td><p><a class="reference internal" href="simple_arctan_fit.html#sphx-glr-auto-examples-model-fitting-simple-arctan-fit-py"><span class="std std-ref">Simple arctan fit</span></a> (<code class="docutils literal notranslate"><span class="pre">simple_arctan_fit.py</span></code>)</p></td>