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Docs were lost in the v1 -> v2 migration...
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giovannipizzi committed May 17, 2020
1 parent 886959b commit b4e1752
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1 change: 1 addition & 0 deletions docs/.gitignore
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build/
39 changes: 39 additions & 0 deletions docs/Makefile
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# Makefile for Sphinx documentation
#

# You can set these variables from the command line.
SPHINXOPTS =
SPHINXBUILD = sphinx-build
PAPER =
BUILDDIR = build

# User-friendly check for sphinx-build
ifeq ($(shell which $(SPHINXBUILD) >/dev/null 2>&1; echo $$?), 1)
$(error The '$(SPHINXBUILD)' command was not found. Make sure you have Sphinx installed, then set the SPHINXBUILD environment variable to point to the full path of the '$(SPHINXBUILD)' executable. Alternatively you can add the directory with the executable to your PATH. If you don't have Sphinx installed, grab it from http://sphinx-doc.org/)
endif

# Internal variables.
PAPEROPT_a4 = -D latex_paper_size=a4
PAPEROPT_letter = -D latex_paper_size=letter
ALLSPHINXOPTS = -n -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) source
# the i18n builder cannot share the environment and doctrees with the others
I18NSPHINXOPTS = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) source

.PHONY: all help clean html dirhtml singlehtml pickle json htmlhelp qthelp devhelp epub latex latexpdf text man changes linkcheck doctest coverage gettext customdefault

customdefault:
$(SPHINXBUILD) -b html -nW $(ALLSPHINXOPTS) $(BUILDDIR)/html

all: html

clean:
rm -r $(BUILDDIR)

html:
$(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html
@echo
@echo "Build finished. The HTML pages are in $(BUILDDIR)/html."


view:
xdg-open $(BUILDDIR)/html/index.html
1 change: 1 addition & 0 deletions docs/requirements_for_rtd.txt
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setuptools>41
348 changes: 348 additions & 0 deletions docs/source/conf.py
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# -*- coding: utf-8 -*-
# pylint:disable=redefined-builtin
import os
import time

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
import seekpath

# -- General configuration ------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
# needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
"sphinx.ext.autodoc",
"sphinx.ext.mathjax",
# 'sphinx.ext.intersphinx',
"sphinx.ext.viewcode",
]

intersphinx_mapping = {
# 'python': ('https://docs.python.org/2.7', None),
}

nitpick_ignore = [("py:obj", "module")]

# Add any paths that contain templates here, relative to this directory.
templates_path = ["_templates"]

# The suffix of source filenames.
source_suffix = ".rst"

# The encoding of source files.
# source_encoding = 'utf-8-sig'

# The master toctree document.
# ~ master_doc = 'index'
master_doc = "index"

# General information about the project.
project = u"seekpath"
copyright = (
u"2016-{}, Giovanni Pizzi, ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE (Theory and Simulation of Materials (THEOS) "
"and National Centre for Computational Design and Discovery of Novel Materials (NCCR MARVEL)),Switzerland. "
"All rights reserved.".format(time.localtime().tm_year)
)

# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
# The short X.Y version.
version = ".".join(seekpath.__version__.split(".")[:2])
# The full version, including alpha/beta/rc tags.
release = seekpath.__version__

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None

# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
# today = ''
# Else, today_fmt is used as the format for a strftime call.
# today_fmt = '%B %d, %Y'

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
exclude_patterns = ["doc.rst"]
# ~ exclude_patterns = ['index.rst']

# The reST default role (used for this markup: `text`) to use for all
# documents.
# default_role = None

# If true, '()' will be appended to :func: etc. cross-reference text.
# add_function_parentheses = True

# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
# add_module_names = True

# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
show_authors = True

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = "sphinx"

# A list of ignored prefixes for module index sorting.
# modindex_common_prefix = []

# If true, keep warnings as "system message" paragraphs in the built documents.
# keep_warnings = False

# -- Options for HTML output ----------------------------------------------

# The theme to use for HTML and HTML Help pages. See the documentation for
# a list of builtin themes.
# ~ html_theme = 'basicstrap'
## SET BELOW

# Theme options are theme-specific and customize the look and feel of a theme
# further. For a list of options available for each theme, see the
# documentation.
# ~ html_theme_options = {
# ~ 'inner_theme': True,
# ~ 'inner_theme_name': 'bootswatch-darkly',
# ~ 'nav_fixed_top': False
# ~ }

# Add any paths that contain custom themes here, relative to this directory.
# ~ html_theme_path = ["."]

# The name for this set of Sphinx documents. If None, it defaults to
# "<project> v<release> documentation".
# html_title = None

# A shorter title for the navigation bar. Default is the same as html_title.
# html_short_title = None

# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
# html_logo = "images/.png"

# The name of an image file (within the static path) to use as favicon of the
# docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
# html_favicon = "images/favicon.ico"

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
# html_static_path = ['_static']

# Add any extra paths that contain custom files (such as robots.txt or
# .htaccess) here, relative to this directory. These files are copied
# directly to the root of the documentation.
# html_extra_path = []

# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
# using the given strftime format.
# html_last_updated_fmt = '%b %d, %Y'

# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
# html_use_smartypants = True

# Custom sidebar templates, maps document names to template names.
# html_sidebars = {}

# Additional templates that should be rendered to pages, maps page names to
# template names.
# html_additional_pages = {}

# If false, no module index is generated.
# html_domain_indices = True

# If false, no index is generated.
# html_use_index = True

# If true, the index is split into individual pages for each letter.
# html_split_index = False

# If true, links to the reST sources are added to the pages.
html_show_sourcelink = False

# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
# html_show_sphinx = True

# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
# ~ html_show_copyright = False

# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it. The value of this option must be the
# base URL from which the finished HTML is served.
html_use_opensearch = "http://seekpath.readthedocs.io"

# This is the file name suffix for HTML files (e.g. ".xhtml").
# html_file_suffix = None

# Language to be used for generating the HTML full-text search index.
# Sphinx supports the following languages:
# 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja'
# 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr'
html_search_language = "en"

# A dictionary with options for the search language support, empty by default.
# Now only 'ja' uses this config value
# html_search_options = {'type': 'default'}

# The name of a javascript file (relative to the configuration directory) that
# implements a search results scorer. If empty, the default will be used.
# html_search_scorer = 'scorer.js'

# Output file base name for HTML help builder.
htmlhelp_basename = "seekpathdoc"

# -- Options for LaTeX output ---------------------------------------------

latex_elements = {
# The paper size ('letterpaper' or 'a4paper').
#'papersize': 'letterpaper',
# The font size ('10pt', '11pt' or '12pt').
#'pointsize': '10pt',
# Additional stuff for the LaTeX preamble.
#'preamble': '',
# Latex figure (float) alignment
#'figure_align': 'htbp',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
# author, documentclass [howto, manual, or own class]).
# latex_documents = [
# ]

# The name of an image file (relative to this directory) to place at the top of
# the title page.
# latex_logo = None

# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
# latex_use_parts = False

# If true, show page references after internal links.
# latex_show_pagerefs = False

# If true, show URL addresses after external links.
# latex_show_urls = False

# Documents to append as an appendix to all manuals.
# latex_appendices = []

# If false, no module index is generated.
# latex_domain_indices = True

# -- Options for manual page output ---------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
# man_pages = [
# ]

# If true, show URL addresses after external links.
# man_show_urls = False

# -- Options for Texinfo output -------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
# dir menu entry, description, category)
# texinfo_documents = [
# ]

# Documents to append as an appendix to all manuals.
# texinfo_appendices = []

# If false, no module index is generated.
# texinfo_domain_indices = True

# How to display URL addresses: 'footnote', 'no', or 'inline'.
# texinfo_show_urls = 'footnote'

# If true, do not generate a @detailmenu in the "Top" node's menu.
# texinfo_no_detailmenu = False

# NOTE: it is needed to have these lines before load_dbenv()
on_rtd = os.environ.get("READTHEDOCS", None) == "True"

if not on_rtd: # only import and set the theme if we're building docs locally
try:
import sphinx_rtd_theme

html_theme = "sphinx_rtd_theme"
html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]
except ImportError:
# No sphinx_rtd_theme installed
pass

# Warnings to ignore when using the -n (nitpicky) option
# We should ignore any python built-in exception, for instance
nitpick_ignore = [
("py:exc", "ArithmeticError"),
("py:exc", "AssertionError"),
("py:exc", "AttributeError"),
("py:exc", "BaseException"),
("py:exc", "BufferError"),
("py:exc", "DeprecationWarning"),
("py:exc", "EOFError"),
("py:exc", "EnvironmentError"),
("py:exc", "Exception"),
("py:exc", "FloatingPointError"),
("py:exc", "FutureWarning"),
("py:exc", "GeneratorExit"),
("py:exc", "IOError"),
("py:exc", "ImportError"),
("py:exc", "ImportWarning"),
("py:exc", "IndentationError"),
("py:exc", "IndexError"),
("py:exc", "KeyError"),
("py:exc", "KeyboardInterrupt"),
("py:exc", "LookupError"),
("py:exc", "MemoryError"),
("py:exc", "NameError"),
("py:exc", "NotImplementedError"),
("py:exc", "OSError"),
("py:exc", "OverflowError"),
("py:exc", "PendingDeprecationWarning"),
("py:exc", "ReferenceError"),
("py:exc", "RuntimeError"),
("py:exc", "RuntimeWarning"),
("py:exc", "StandardError"),
("py:exc", "StopIteration"),
("py:exc", "SyntaxError"),
("py:exc", "SyntaxWarning"),
("py:exc", "SystemError"),
("py:exc", "SystemExit"),
("py:exc", "TabError"),
("py:exc", "TypeError"),
("py:exc", "UnboundLocalError"),
("py:exc", "UnicodeDecodeError"),
("py:exc", "UnicodeEncodeError"),
("py:exc", "UnicodeError"),
("py:exc", "UnicodeTranslateError"),
("py:exc", "UnicodeWarning"),
("py:exc", "UserWarning"),
("py:exc", "VMSError"),
("py:exc", "ValueError"),
("py:exc", "Warning"),
("py:exc", "WindowsError"),
("py:exc", "ZeroDivisionError"),
("py:obj", "str"),
("py:obj", "list"),
("py:obj", "tuple"),
("py:obj", "int"),
("py:obj", "float"),
("py:obj", "bool"),
("py:obj", "Mapping"),
]
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