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Add parameter meta, remove unused variable from downsample workflow #20

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Add parameter meta, remove unused variable from downsample workflow #20

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361c657
Add parameter meta, remove unused variable
aofarrel May 31, 2023
537963f
Fix typo
aofarrel May 31, 2023
935c21f
Clarify len(ref) != refLength
aofarrel May 31, 2023
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8 changes: 7 additions & 1 deletion assembly/wdl/tasks/down_sampling.wdl
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Expand Up @@ -8,7 +8,13 @@ workflow RunDownSampling{
Float downsampledCoverage
Float refLength = 3100000000.0
File? referenceFasta
Int fileExtractionDiskSizeGB = 256
}

parameter_meta {
readFiles: "Reads files in BAM, CRAM, FASTQ, or FASTA format (optionally gzipped)",
downsampledCoverage: "Target coverage after downsampling",
refLength: "Length of reference genome in bytes",
referenceFasta: "Fasta of reference genome (does not override refLength)"
}

scatter (readFile in readFiles){
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