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TMI_COVID19

The COVID-CT can be downloaded from: https://github.com/UCSD-AI4H/COVID-CT/tree/master/Images-processed

  • Use the code 'covid_seperation.py' to split Train, Test, and Validation sets. It needs '.csv' files and CT-images to be run.
  • The code 'covid_preprocess' copies all images to a folder and make labels.The output is a compressed file containing image names and labels (0 for NonCovid Cases and 1 for Covid Cases).

UPDATE: Standardized Dataset

The CT and X-ray Dataset can be downloaded from: https://drive.google.com/open?id=1cmujE0e3vu2CgIbGoIxPkfVHVs5C988o You may change the training data, but test sets should not be changed.

CT folder:

CT_COVID.zip: all CT images for COVID cases.

CT_NonCOVID.zip: all CT images for Non-COVID cases.

CT_DATA.zip: all CT images seperated for training, testing, and validation.

X-ray folder:

X_DATA.zip: all x-ray images seperated for training and testing.

Alpha-test set:

The images that were sent to radiologists and the name mappings can be found here:

https://drive.google.com/open?id=1AQRrpRUzGhyTTc28ODlpZqqrG3V4kDx4

UPDATE

CT Radiologist.zip: CT images that each radiologist could classify + .xlsx file including actual name of each image, predicted and actual class. 0 is for Non-COVID and 1 for COVID class.

Xray Radiologist.zip: Xray images + .xlsx file including actual name of each image, predicted and actual class. 0 is for normal, 1 for COVID, and 2 for pneumonia class.

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