Fix obs join in azimuth for conflicting columns

hubmapconsortium · Oct 27, 2023 · 22fd51e · 22fd51e
1 parent cd8eb3f
commit 22fd51e
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/containers/azimuth/context/main.py b/containers/azimuth/context/main.py
@@ -68,7 +68,7 @@ def create_clean_matrix(self, matrix: anndata.AnnData):
     def copy_annotations(
         self, matrix: anndata.AnnData, annotated_matrix: anndata.AnnData
     ):
-        matrix.obs = matrix.obs.join(annotated_matrix.obs)
+        matrix.obs = matrix.obs.join(annotated_matrix.obs, rsuffix="_azimuth")
 
     def run_azimuth_scripts(self, matrix_path: Path, reference_data: Path):
         script_command = ["Rscript", "/run_azimuth.R", matrix_path, reference_data]