use both default and job provided options

hubmapconsortium · Nov 30, 2023 · 0d52f95 · 0d52f95
1 parent 1e4ed89
commit 0d52f95
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/steps/run-one.cwl b/steps/run-one.cwl
@@ -82,7 +82,7 @@ steps:
       matrix: gene_expression/matrix_with_gene_expr
       options:
         source: algorithm
-        valueFrom: $(self.summarize || getDefaultSummarizeOptions(self))
+        valueFrom: $(self.summarize && getDefaultSummarizeOptions(self))
     out: [summary, annotations]
 
   collect:
@@ -94,4 +94,4 @@ steps:
       outputDirectory:
         source: algorithm
         valueFrom: $(selectOutputDirectory(self))
-    out: [directory]
+    out: [directory]