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Lee Lab

Neuronal Circuits

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  1. FANC_auto_recon FANC_auto_recon Public

    Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset

    Python 11 8

  2. cb2_project_analysis cb2_project_analysis Public

    Analysis source code for CB2 project

    Jupyter Notebook 4 2

  3. raygun raygun Public

    An image enhancement and segmentation pipeline for generating connectomic reconstructions from X-ray holographic nanotomography, using CycleGANs, Local Shape Descriptors, and Mutex Watershed. Built…

    Python 3 1

  4. autoseg autoseg Public

    Automated deep learning segmentation for large-scale biological datasets.

    Python 3 1

  5. tobin17 tobin17 Public

    Tobin WF, Wilson RI, Lee WC. eLife 2017

    MATLAB 2 1

  6. GridTapeStage GridTapeStage Public

    GridTape TEM imaging stage

    Python 2 2

Repositories

Showing 10 of 41 repositories
  • FANC_auto_recon Public

    Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset

    htem/FANC_auto_recon’s past year of commit activity
    Python 11 GPL-3.0 8 0 0 Updated Nov 4, 2024
  • cb2_project_analysis Public

    Analysis source code for CB2 project

    htem/cb2_project_analysis’s past year of commit activity
    Jupyter Notebook 4 MIT 2 1 0 Updated Oct 4, 2024
  • run_elastix Public

    A pipeline for running elastix to register two 3D image volumes

    htem/run_elastix’s past year of commit activity
    Shell 0 GPL-3.0 0 0 0 Updated Aug 19, 2024
  • PPC_inhibitoryMotifs Public
    htem/PPC_inhibitoryMotifs’s past year of commit activity
    Jupyter Notebook 0 0 1 0 Updated Jun 24, 2024
  • GridTapeStage Public

    GridTape TEM imaging stage

    htem/GridTapeStage’s past year of commit activity
    Python 2 2 0 0 Updated Jun 6, 2024
  • tem-tomo Public Forked from kuan-lab/tem-tomo

    Code for processing and evaluating TEM tomography data

    htem/tem-tomo’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated May 31, 2024
  • raygun Public

    An image enhancement and segmentation pipeline for generating connectomic reconstructions from X-ray holographic nanotomography, using CycleGANs, Local Shape Descriptors, and Mutex Watershed. Built with PyTorch, Daisy, and Gunpowder.

    htem/raygun’s past year of commit activity
    Python 3 AGPL-3.0 1 7 (2 issues need help) 1 Updated Mar 5, 2024
  • aedes_public Public
    htem/aedes_public’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 28, 2024
  • autoseg Public

    Automated deep learning segmentation for large-scale biological datasets.

    htem/autoseg’s past year of commit activity
    Python 3 Apache-2.0 1 0 0 Updated Dec 15, 2023
  • ztools Public

    A toolbox for Zarr creation/manipulation scripts

    htem/ztools’s past year of commit activity
    Python 0 0 0 0 Updated Nov 2, 2023
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