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Hi,
I would like to add some libraries to this this. Disclaimer: I am the author of iminuit, resample, jacobi, and numba-stats.
These libs are foundational for HEP analysis in Python, if you want to work outside of ROOT. iminuit with numba-stats is faster than RooFit and similarly versatile, while being a much more open system. jacobi and resample cover all needs of estimating and propagating statistical uncertainties. iminuit and resample are part of Scikit-HEP. All these libraries have excellent documentation and are of high quality.
I further changed the list of nice standard libraries: pathlib is the modern replacement for direct calls to the os and glob modules.