Update Modules [6 December 2024, 15:43]

hpcugentbot · Dec 6, 2024 · fca4d07 · fca4d07
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diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json
diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BLAST+.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BLAST+.md
@@ -21,7 +21,7 @@ module load BLAST+/2.14.1-gompi-2023a
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|BLAST+/2.14.1-gompi-2023a|-|x|x|x|x|x|x|
+|BLAST+/2.14.1-gompi-2023a|x|x|x|x|x|x|x|
 |BLAST+/2.14.0-gompi-2022b|-|x|x|x|-|-|-|
 |BLAST+/2.13.0-gompi-2022a|-|x|x|x|-|-|-|
 |BLAST+/2.12.0-gompi-2021b|-|x|x|x|-|-|-|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CD-HIT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CD-HIT.md
@@ -22,7 +22,7 @@ module load CD-HIT/4.8.1-iccifort-2019.5.281
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
 |CD-HIT/4.8.1-iccifort-2019.5.281|-|x|x|-|-|-|-|
-|CD-HIT/4.8.1-GCC-12.3.0|x|x|x|x|-|x|x|
+|CD-HIT/4.8.1-GCC-12.3.0|x|x|x|x|x|x|x|
 |CD-HIT/4.8.1-GCC-12.2.0|-|x|x|x|-|-|-|
 |CD-HIT/4.8.1-GCC-11.2.0|-|x|x|-|-|-|-|
 |CD-HIT/4.8.1-GCC-10.2.0|-|x|x|x|-|-|-|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Clang.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Clang.md
@@ -14,13 +14,14 @@ The overview below shows which Clang installations are available per HPC-UGent T
 To start using Clang, load one of these modules using a `module load` command like:
 
 ```shell
-module load Clang/17.0.0_20230515-GCCcore-12.3.0-CUDA-12.1.1
+module load Clang/17.0.6-GCCcore-13.2.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|Clang/17.0.6-GCCcore-13.2.0|-|x|-|x|-|-|-|
 |Clang/17.0.0_20230515-GCCcore-12.3.0-CUDA-12.1.1|x|-|x|-|x|-|-|
 |Clang/16.0.6-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |Clang/16.0.4-GCCcore-12.2.0|-|x|x|x|-|x|-|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Java.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Java.md
@@ -14,14 +14,16 @@ The overview below shows which Java installations are available per HPC-UGent Ti
 To start using Java, load one of these modules using a `module load` command like:
 
 ```shell
-module load Java/21.0.2
+module load Java/21.0.5
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|Java/21.0.5|x|-|-|-|-|-|x|
 |Java/21.0.2|-|x|x|x|-|x|-|
+|Java/21(@Java/21.0.5)|x|-|-|-|-|-|x|
 |Java/21(@Java/21.0.2)|-|x|x|x|-|x|-|
 |Java/17.0.6|x|x|x|x|-|x|x|
 |Java/17(@Java/17.0.6)|x|x|x|x|-|x|x|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LMDB.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LMDB.md
@@ -21,7 +21,7 @@ module load LMDB/0.9.31-GCCcore-12.3.0
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|LMDB/0.9.31-GCCcore-12.3.0|-|x|x|x|x|x|x|
+|LMDB/0.9.31-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |LMDB/0.9.29-GCCcore-12.2.0|-|x|x|x|-|-|-|
 |LMDB/0.9.29-GCCcore-11.3.0|-|x|x|x|-|-|-|
 |LMDB/0.9.29-GCCcore-11.2.0|-|x|x|x|-|-|-|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MATLAB.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MATLAB.md
@@ -21,6 +21,6 @@ module load MATLAB/2022b-r5
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|MATLAB/2022b-r5|-|x|x|x|-|x|-|
+|MATLAB/2022b-r5|x|x|x|x|-|x|-|
 |MATLAB/2021b|-|x|x|-|-|-|-|
 |MATLAB/2019b|-|x|x|-|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NanoFilt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NanoFilt.md
@@ -21,5 +21,5 @@ module load NanoFilt/2.8.0-foss-2023a
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|NanoFilt/2.8.0-foss-2023a|-|x|x|x|-|x|x|
+|NanoFilt/2.8.0-foss-2023a|x|x|x|x|x|x|x|
 |NanoFilt/2.6.0-intel-2019b-Python-3.7.4|-|x|x|-|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Nextflow.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Nextflow.md
@@ -14,13 +14,14 @@ The overview below shows which Nextflow installations are available per HPC-UGen
 To start using Nextflow, load one of these modules using a `module load` command like:
 
 ```shell
-module load Nextflow/24.04.2
+module load Nextflow/24.10.2
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|Nextflow/24.10.2|x|x|x|x|-|x|x|
 |Nextflow/24.04.2|x|x|x|x|-|x|x|
 |Nextflow/23.10.0|-|x|x|x|-|-|-|
 |Nextflow/23.04.2|-|x|x|x|-|-|-|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyHMMER.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyHMMER.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+PyHMMER
+=======
+
+# Available modules
+
+
+The overview below shows which PyHMMER installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using PyHMMER, load one of these modules using a `module load` command like:
+
+```shell
+module load PyHMMER/0.10.15-gompi-2023b
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*  
+
+| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|PyHMMER/0.10.15-gompi-2023b|-|x|x|x|-|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RAPIDS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RAPIDS.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+RAPIDS
+======
+
+# Available modules
+
+
+The overview below shows which RAPIDS installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using RAPIDS, load one of these modules using a `module load` command like:
+
+```shell
+module load RAPIDS/24.4-foss-2023a-CUDA-12.1.1
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*  
+
+| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|RAPIDS/24.4-foss-2023a-CUDA-12.1.1|x|-|-|-|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RDKit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RDKit.md
@@ -21,7 +21,7 @@ module load RDKit/2024.03.3-foss-2023a
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|RDKit/2024.03.3-foss-2023a|-|x|x|x|-|x|x|
+|RDKit/2024.03.3-foss-2023a|x|x|x|x|-|x|x|
 |RDKit/2022.09.4-foss-2022a|-|x|x|x|-|-|-|
 |RDKit/2022.03.5-foss-2021b|-|x|x|-|-|-|-|
 |RDKit/2020.09.3-foss-2019b-Python-3.7.4|-|x|x|-|-|-|-|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Z3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Z3.md
@@ -21,7 +21,7 @@ module load Z3/4.13.0-GCCcore-13.2.0
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|Z3/4.13.0-GCCcore-13.2.0|-|x|x|x|-|x|x|
+|Z3/4.13.0-GCCcore-13.2.0|x|x|x|x|-|x|x|
 |Z3/4.12.2-GCCcore-12.3.0-Python-3.11.3|-|x|x|x|-|-|-|
 |Z3/4.12.2-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |Z3/4.12.2-GCCcore-12.2.0-Python-3.10.8|-|x|x|x|-|-|-|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bakta.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bakta.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+bakta
+=====
+
+# Available modules
+
+
+The overview below shows which bakta installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using bakta, load one of these modules using a `module load` command like:
+
+```shell
+module load bakta/1.10.1-foss-2023b
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*  
+
+| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|bakta/1.10.1-foss-2023b|-|x|x|x|-|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cpio.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cpio.md
@@ -21,4 +21,4 @@ module load cpio/2.15-GCCcore-12.3.0
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|cpio/2.15-GCCcore-12.3.0|-|-|-|-|x|-|x|
+|cpio/2.15-GCCcore-12.3.0|x|-|-|-|x|-|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cutadapt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cutadapt.md
@@ -21,7 +21,7 @@ module load cutadapt/4.9-GCCcore-12.3.0
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|cutadapt/4.9-GCCcore-12.3.0|-|x|x|x|-|x|x|
+|cutadapt/4.9-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |cutadapt/4.2-GCCcore-11.3.0|-|x|x|x|-|-|-|
 |cutadapt/3.5-GCCcore-11.2.0|-|x|x|-|-|-|-|
 |cutadapt/3.4-GCCcore-10.2.0|-|x|x|x|-|-|-|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/decona.md b/mkdocs/docs/HPC/only/gent/available_software/detail/decona.md
@@ -21,5 +21,5 @@ module load decona/1.4-20240731-foss-2023a
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|decona/1.4-20240731-foss-2023a|-|x|x|x|-|x|x|
+|decona/1.4-20240731-foss-2023a|x|x|x|x|x|x|x|
 |decona/0.1.2-foss-2019b-Python-3.7.4|-|x|x|-|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/jedi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/jedi.md
@@ -22,4 +22,4 @@ module load jedi/0.19.1-GCCcore-13.2.0
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
 |jedi/0.19.1-GCCcore-13.2.0|-|x|x|x|-|x|x|
-|jedi/0.19.0-GCCcore-12.3.0|x|-|-|-|-|-|-|
+|jedi/0.19.0-GCCcore-12.3.0|x|-|x|-|x|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/makeinfo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/makeinfo.md
@@ -22,7 +22,7 @@ module load makeinfo/7.1-GCCcore-13.2.0
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
 |makeinfo/7.1-GCCcore-13.2.0|-|x|x|x|-|x|x|
-|makeinfo/7.0.3-GCCcore-12.3.0|-|x|x|x|x|-|x|
+|makeinfo/7.0.3-GCCcore-12.3.0|x|x|x|x|x|-|x|
 |makeinfo/6.7-GCCcore-10.3.0-minimal|-|x|x|x|-|-|-|
 |makeinfo/6.7-GCCcore-10.3.0|-|x|x|-|-|-|-|
 |makeinfo/6.7-GCCcore-10.2.0-minimal|-|x|x|x|-|-|-|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/medaka.md b/mkdocs/docs/HPC/only/gent/available_software/detail/medaka.md
@@ -25,7 +25,7 @@ module load medaka/1.12.1-foss-2023a-CUDA-12.1.1
 |medaka/1.12.1-foss-2023a|-|x|x|x|-|x|x|
 |medaka/1.12.0-foss-2023a-CUDA-12.1.1|x|-|x|-|x|-|-|
 |medaka/1.12.0-foss-2023a|-|x|x|x|-|x|x|
-|medaka/1.11.3-foss-2023a|-|x|x|x|-|x|x|
+|medaka/1.11.3-foss-2023a|x|x|x|x|x|x|x|
 |medaka/1.11.3-foss-2022a|-|x|x|x|-|-|-|
 |medaka/1.9.1-foss-2022a|-|x|x|x|-|-|-|
 |medaka/1.8.1-foss-2022a|-|x|x|x|-|-|-|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pigz.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pigz.md
@@ -21,7 +21,7 @@ module load pigz/2.8-GCCcore-12.3.0
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|pigz/2.8-GCCcore-12.3.0|-|x|x|x|x|x|x|
+|pigz/2.8-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |pigz/2.7-GCCcore-11.3.0|-|x|x|x|-|-|-|
 |pigz/2.6-GCCcore-11.2.0|-|x|x|x|-|-|-|
 |pigz/2.6-GCCcore-10.2.0|-|x|x|x|-|-|-|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/psutil.md b/mkdocs/docs/HPC/only/gent/available_software/detail/psutil.md
@@ -14,11 +14,12 @@ The overview below shows which psutil installations are available per HPC-UGent
 To start using psutil, load one of these modules using a `module load` command like:
 
 ```shell
-module load psutil/5.9.5-GCCcore-12.2.0
+module load psutil/6.1.0-GCCcore-13.2.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|psutil/6.1.0-GCCcore-13.2.0|-|x|x|x|-|x|x|
 |psutil/5.9.5-GCCcore-12.2.0|-|x|x|x|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/python-isal.md b/mkdocs/docs/HPC/only/gent/available_software/detail/python-isal.md
@@ -14,13 +14,14 @@ The overview below shows which python-isal installations are available per HPC-U
 To start using python-isal, load one of these modules using a `module load` command like:
 
 ```shell
-module load python-isal/1.1.0-GCCcore-12.3.0
+module load python-isal/1.6.1-GCCcore-13.2.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|python-isal/1.6.1-GCCcore-13.2.0|-|x|x|x|-|x|x|
 |python-isal/1.1.0-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |python-isal/1.1.0-GCCcore-11.3.0|-|x|x|x|-|-|-|
 |python-isal/0.11.1-GCCcore-11.2.0|-|x|x|-|-|-|-|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/qcat.md b/mkdocs/docs/HPC/only/gent/available_software/detail/qcat.md
@@ -23,5 +23,5 @@ module load qcat/1.1.0-intel-2020a-Python-3.8.2
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
 |qcat/1.1.0-intel-2020a-Python-3.8.2|-|x|x|-|-|-|-|
 |qcat/1.1.0-intel-2019b-Python-3.7.4|-|x|x|-|-|-|-|
-|qcat/1.1.0-foss-2023a|-|x|x|x|-|x|x|
+|qcat/1.1.0-foss-2023a|x|x|x|x|x|x|x|
 |qcat/1.1.0-foss-2019b-Python-3.7.4|-|x|x|-|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/versioningit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/versioningit.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+versioningit
+============
+
+# Available modules
+
+
+The overview below shows which versioningit installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using versioningit, load one of these modules using a `module load` command like:
+
+```shell
+module load versioningit/3.1.2-GCCcore-13.2.0
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*  
+
+| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|versioningit/3.1.2-GCCcore-13.2.0|-|x|x|x|-|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/wradlib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/wradlib.md
@@ -21,4 +21,4 @@ module load wradlib/2.0.3-foss-2023a
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|wradlib/2.0.3-foss-2023a|-|x|-|-|-|-|x|
+|wradlib/2.0.3-foss-2023a|-|x|x|-|-|-|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/zlib-ng.md b/mkdocs/docs/HPC/only/gent/available_software/detail/zlib-ng.md
@@ -14,12 +14,13 @@ The overview below shows which zlib-ng installations are available per HPC-UGent
 To start using zlib-ng, load one of these modules using a `module load` command like:
 
 ```shell
-module load zlib-ng/2.1.6-GCCcore-12.3.0
+module load zlib-ng/2.2.2-GCCcore-13.2.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|zlib-ng/2.2.2-GCCcore-13.2.0|-|x|x|x|-|x|x|
 |zlib-ng/2.1.6-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |zlib-ng/2.0.7-GCCcore-11.3.0|-|x|x|x|-|-|-|
diff --git a/mkdocs/extra/gent.yml b/mkdocs/extra/gent.yml
@@ -16,7 +16,7 @@ hpcname: hpcugent
 loginnode: login.hpc.ugent.be
 loginhost: gligar07.gastly.os
 altloginhost: gligar08.gastly.os
-modules_last_updated: Tue, 03 Dec 2024 at 15:44:40 CET # This line is automatically updated by scripts/available_modules/available_modules.py
+modules_last_updated: Fri, 06 Dec 2024 at 15:44:40 CET # This line is automatically updated by scripts/available_modules/available_modules.py
 # get these with ssh-keyscan gligar01.ugent.be > file
 # ssh-keygen -l -f file
 # ssh-keygen -l -f file -E md5