Update Modules [16 December 2024, 15:43]

hpcugentbot · Dec 16, 2024 · d65773a · d65773a
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Showing 14 changed files with 43 additions and 12 deletions.
diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json
diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Anaconda3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Anaconda3.md
@@ -14,13 +14,14 @@ The overview below shows which Anaconda3 installations are available per HPC-UGe
 To start using Anaconda3, load one of these modules using a `module load` command like:
 
 ```shell
-module load Anaconda3/2023.03-1
+module load Anaconda3/2024.02-1
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|Anaconda3/2024.02-1|x|x|x|x|-|x|x|
 |Anaconda3/2023.03-1|-|x|x|x|-|-|-|
 |Anaconda3/2020.11|-|x|x|-|-|-|-|
 |Anaconda3/2020.07|-|x|-|-|-|-|-|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FastQC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FastQC.md
@@ -14,11 +14,12 @@ The overview below shows which FastQC installations are available per HPC-UGent
 To start using FastQC, load one of these modules using a `module load` command like:
 
 ```shell
-module load FastQC/0.11.9-Java-11
+module load FastQC/0.12.1-Java-11
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|FastQC/0.12.1-Java-11|x|x|x|x|-|x|x|
 |FastQC/0.11.9-Java-11|-|x|x|x|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Kraken2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Kraken2.md
@@ -14,12 +14,13 @@ The overview below shows which Kraken2 installations are available per HPC-UGent
 To start using Kraken2, load one of these modules using a `module load` command like:
 
 ```shell
-module load Kraken2/2.1.2-gompi-2021a
+module load Kraken2/2.1.3-gompi-2023a
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|Kraken2/2.1.3-gompi-2023a|x|x|x|x|-|x|x|
 |Kraken2/2.1.2-gompi-2021a|-|x|x|x|-|-|-|
 |Kraken2/2.0.9-beta-gompi-2020a-Perl-5.30.2|-|x|x|-|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Whisper.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Whisper.md
@@ -14,11 +14,12 @@ The overview below shows which Whisper installations are available per HPC-UGent
 To start using Whisper, load one of these modules using a `module load` command like:
 
 ```shell
-module load Whisper/20231117-foss-2023a-CUDA-12.1.1
+module load Whisper/20240930-foss-2023a-CUDA-12.1.1
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|Whisper/20240930-foss-2023a-CUDA-12.1.1|x|-|x|-|x|-|-|
 |Whisper/20231117-foss-2023a-CUDA-12.1.1|x|-|x|-|x|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/deepTools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/deepTools.md
@@ -14,12 +14,13 @@ The overview below shows which deepTools installations are available per HPC-UGe
 To start using deepTools, load one of these modules using a `module load` command like:
 
 ```shell
-module load deepTools/3.5.1-foss-2021b
+module load deepTools/3.5.5-gfbf-2023a
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|deepTools/3.5.5-gfbf-2023a|x|x|x|x|-|x|x|
 |deepTools/3.5.1-foss-2021b|-|x|x|-|-|-|-|
 |deepTools/3.3.1-intel-2019b-Python-3.7.4|-|x|x|-|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libidn2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libidn2.md
@@ -21,7 +21,7 @@ module load libidn2/2.3.7-GCCcore-12.3.0
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|libidn2/2.3.7-GCCcore-12.3.0|-|x|x|x|x|x|x|
+|libidn2/2.3.7-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |libidn2/2.3.2-GCCcore-11.2.0|-|x|x|x|-|-|-|
 |libidn2/2.3.0-GCCcore-10.3.0|-|x|x|x|-|-|-|
 |libidn2/2.3.0-GCCcore-10.2.0|-|x|x|x|-|-|-|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/llama-cpp-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/llama-cpp-python.md
@@ -0,0 +1,25 @@
+---
+hide:
+  - toc
+---
+
+llama-cpp-python
+================
+
+# Available modules
+
+
+The overview below shows which llama-cpp-python installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using llama-cpp-python, load one of these modules using a `module load` command like:
+
+```shell
+module load llama-cpp-python/0.3.2-gfbf-2023a-CUDA-12.1.1
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*  
+
+| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|llama-cpp-python/0.3.2-gfbf-2023a-CUDA-12.1.1|x|-|x|-|x|-|-|
+|llama-cpp-python/0.3.2-gfbf-2023a|x|-|x|-|x|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/plotly.py.md b/mkdocs/docs/HPC/only/gent/available_software/detail/plotly.py.md
@@ -22,7 +22,7 @@ module load plotly.py/5.18.0-GCCcore-13.2.0
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
 |plotly.py/5.18.0-GCCcore-13.2.0|-|x|x|x|-|x|x|
-|plotly.py/5.16.0-GCCcore-12.3.0|-|x|x|x|-|x|x|
+|plotly.py/5.16.0-GCCcore-12.3.0|x|x|x|x|-|x|x|
 |plotly.py/5.13.1-GCCcore-12.2.0|-|x|x|x|-|-|-|
 |plotly.py/5.12.0-GCCcore-11.3.0|-|x|x|x|-|-|-|
 |plotly.py/5.10.0-GCCcore-11.3.0|-|x|x|-|-|-|-|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyBigWig.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyBigWig.md
@@ -21,7 +21,7 @@ module load pyBigWig/0.3.22-gfbf-2023a
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|pyBigWig/0.3.22-gfbf-2023a|-|x|x|x|-|x|x|
+|pyBigWig/0.3.22-gfbf-2023a|x|x|x|x|-|x|x|
 |pyBigWig/0.3.22-foss-2023a|-|x|x|x|-|x|-|
 |pyBigWig/0.3.18-foss-2022a|-|x|x|x|-|-|-|
 |pyBigWig/0.3.18-foss-2021b|-|x|x|-|-|-|-|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-build-core.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-build-core.md
@@ -22,4 +22,5 @@ module load scikit-build-core/0.9.3-GCCcore-13.2.0
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
 |scikit-build-core/0.9.3-GCCcore-13.2.0|x|x|x|x|x|x|x|
+|scikit-build-core/0.9.3-GCCcore-12.3.0|x|-|x|-|x|-|-|
 |scikit-build-core/0.5.0-GCCcore-12.3.0|-|x|x|x|-|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/wget.md b/mkdocs/docs/HPC/only/gent/available_software/detail/wget.md
@@ -21,7 +21,7 @@ module load wget/1.24.5-GCCcore-12.3.0
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|wget/1.24.5-GCCcore-12.3.0|-|x|x|x|x|x|x|
+|wget/1.24.5-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |wget/1.21.2-GCCcore-11.2.0|-|x|x|x|-|-|-|
 |wget/1.21.1-GCCcore-10.3.0|-|x|x|x|-|-|-|
 |wget/1.20.3-GCCcore-10.2.0|-|x|x|x|-|-|-|

diff --git a/mkdocs/extra/gent.yml b/mkdocs/extra/gent.yml
@@ -16,7 +16,7 @@ hpcname: hpcugent
 loginnode: login.hpc.ugent.be
 loginhost: gligar07.gastly.os
 altloginhost: gligar08.gastly.os
-modules_last_updated: Thu, 12 Dec 2024 at 15:44:46 CET # This line is automatically updated by scripts/available_modules/available_modules.py
+modules_last_updated: Mon, 16 Dec 2024 at 15:44:45 CET # This line is automatically updated by scripts/available_modules/available_modules.py
 # get these with ssh-keyscan gligar01.ugent.be > file
 # ssh-keygen -l -f file
 # ssh-keygen -l -f file -E md5