Skip to content

Commit

Permalink
Merge pull request hpcugent#776 from hpcugentbot/auto_update_modules_…
Browse files Browse the repository at this point in the history
…2024-11-07_15-43

Auto Update Modules [7 November 2024, 15:43]
  • Loading branch information
boegel authored Nov 7, 2024
2 parents 1b72199 + 61da01d commit 989e615
Show file tree
Hide file tree
Showing 31 changed files with 62 additions and 30 deletions.

Large diffs are not rendered by default.

Large diffs are not rendered by default.

Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ module load Boost/1.85.0-GCC-13.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Boost/1.85.0-GCC-13.3.0|x|x|x|x|-|x|-|
|Boost/1.85.0-GCC-13.3.0|x|x|x|x|-|x|x|
|Boost/1.83.0-GCC-13.2.0|x|x|x|x|x|x|x|
|Boost/1.82.0-GCC-12.3.0|x|x|x|x|x|x|x|
|Boost/1.81.0-GCC-12.2.0|x|x|x|x|-|x|-|
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -21,6 +21,6 @@ module load CapnProto/1.0.1-GCCcore-12.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|CapnProto/1.0.1-GCCcore-12.3.0|x|x|x|x|-|x|x|
|CapnProto/1.0.1-GCCcore-12.3.0|x|x|x|x|x|x|x|
|CapnProto/0.9.1-GCCcore-11.2.0|x|x|x|-|-|-|-|
|CapnProto/0.8.0-GCCcore-9.3.0|-|x|x|x|-|-|-|
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ module load Catch2/2.13.10-GCCcore-13.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Catch2/2.13.10-GCCcore-13.3.0|x|x|x|x|-|x|-|
|Catch2/2.13.10-GCCcore-13.3.0|x|x|x|x|-|x|x|
|Catch2/2.13.9-GCCcore-13.2.0|x|x|x|x|x|x|x|
|Catch2/2.13.9-GCCcore-12.3.0|x|x|x|x|x|x|x|
|Catch2/2.13.9-GCCcore-12.2.0|x|x|x|x|-|x|-|
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ module load Cython/3.0.10-GCCcore-13.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Cython/3.0.10-GCCcore-13.3.0|x|x|x|x|-|x|-|
|Cython/3.0.10-GCCcore-13.3.0|x|x|x|x|-|x|x|
|Cython/3.0.10-GCCcore-13.2.0|x|x|x|x|-|x|x|
|Cython/3.0.8-GCCcore-12.3.0|x|x|x|x|x|x|x|
|Cython/3.0.8-GCCcore-12.2.0|x|x|x|x|-|-|-|
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ module load DendroPy/4.6.1-GCCcore-12.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|DendroPy/4.6.1-GCCcore-12.3.0|x|x|x|x|-|x|x|
|DendroPy/4.6.1-GCCcore-12.3.0|x|x|x|x|x|x|x|
|DendroPy/4.5.2-GCCcore-11.3.0|x|x|x|x|-|x|-|
|DendroPy/4.5.2-GCCcore-11.2.0|x|x|x|-|-|-|-|
|DendroPy/4.5.2-GCCcore-10.2.0-Python-2.7.18|-|x|x|x|-|-|-|
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ module load Eigen/3.4.0-GCCcore-13.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Eigen/3.4.0-GCCcore-13.3.0|x|x|x|x|-|x|-|
|Eigen/3.4.0-GCCcore-13.3.0|x|x|x|x|-|x|x|
|Eigen/3.4.0-GCCcore-13.2.0|x|x|x|x|x|x|x|
|Eigen/3.4.0-GCCcore-12.3.0|x|x|x|x|x|x|x|
|Eigen/3.4.0-GCCcore-12.2.0|x|x|x|x|-|x|-|
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,7 @@ module load FastTree/2.1.11-GCCcore-13.2.0
| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|FastTree/2.1.11-GCCcore-13.2.0|x|x|x|x|-|x|x|
|FastTree/2.1.11-GCCcore-12.3.0|x|x|x|x|-|x|x|
|FastTree/2.1.11-GCCcore-12.3.0|x|x|x|x|x|x|x|
|FastTree/2.1.11-GCCcore-11.3.0|x|x|x|x|-|-|-|
|FastTree/2.1.11-GCCcore-11.2.0|x|x|x|-|-|-|-|
|FastTree/2.1.11-GCCcore-10.2.0|-|x|x|x|-|-|-|
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -14,13 +14,14 @@ The overview below shows which FlexiBLAS installations are available per HPC-UGe
To start using FlexiBLAS, load one of these modules using a `module load` command like:

```shell
module load FlexiBLAS/3.3.1-GCC-13.2.0
module load FlexiBLAS/3.4.4-GCC-13.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|FlexiBLAS/3.4.4-GCC-13.3.0|x|x|x|x|-|x|x|
|FlexiBLAS/3.3.1-GCC-13.2.0|x|x|x|x|x|x|x|
|FlexiBLAS/3.3.1-GCC-12.3.0|x|x|x|x|x|x|x|
|FlexiBLAS/3.2.1-GCC-12.2.0|x|x|x|x|-|-|-|
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -14,13 +14,14 @@ The overview below shows which GTDB-Tk installations are available per HPC-UGent
To start using GTDB-Tk, load one of these modules using a `module load` command like:

```shell
module load GTDB-Tk/2.3.2-foss-2023a
module load GTDB-Tk/2.4.0-foss-2023a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|GTDB-Tk/2.4.0-foss-2023a|x|x|x|x|x|x|x|
|GTDB-Tk/2.3.2-foss-2023a|x|x|x|x|-|x|x|
|GTDB-Tk/2.0.0-intel-2021b|x|x|x|-|-|-|-|
|GTDB-Tk/1.7.0-intel-2020b|-|x|x|-|-|-|-|
Expand Down
2 changes: 1 addition & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/ICU.md
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ module load ICU/75.1-GCCcore-13.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|ICU/75.1-GCCcore-13.3.0|x|x|x|x|-|x|-|
|ICU/75.1-GCCcore-13.3.0|x|x|x|x|-|x|x|
|ICU/74.1-GCCcore-13.2.0|x|x|x|x|x|x|x|
|ICU/73.2-GCCcore-12.3.0|x|x|x|x|x|x|x|
|ICU/72.1-GCCcore-12.2.0|x|x|x|x|-|x|-|
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -22,6 +22,6 @@ module load Mash/2.3-intel-compilers-2021.4.0
| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Mash/2.3-intel-compilers-2021.4.0|x|x|x|-|-|-|-|
|Mash/2.3-GCC-12.3.0|x|x|x|x|-|x|x|
|Mash/2.3-GCC-12.3.0|x|x|x|x|x|x|x|
|Mash/2.3-GCC-11.2.0|x|x|x|-|-|-|-|
|Mash/2.2-GCC-9.3.0|-|x|x|x|-|-|-|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/Nim.md
Original file line number Diff line number Diff line change
Expand Up @@ -14,12 +14,13 @@ The overview below shows which Nim installations are available per HPC-UGent Tie
To start using Nim, load one of these modules using a `module load` command like:

```shell
module load Nim/1.6.6-GCCcore-11.2.0
module load Nim/2.2.0-GCCcore-12.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Nim/2.2.0-GCCcore-12.3.0|x|x|x|x|-|x|x|
|Nim/1.6.6-GCCcore-11.2.0|x|x|x|-|-|-|-|
|Nim/1.4.6-GCCcore-10.2.0|-|x|x|-|-|-|-|
Original file line number Diff line number Diff line change
Expand Up @@ -14,13 +14,14 @@ The overview below shows which OpenBLAS installations are available per HPC-UGen
To start using OpenBLAS, load one of these modules using a `module load` command like:

```shell
module load OpenBLAS/0.3.24-GCC-13.2.0
module load OpenBLAS/0.3.27-GCC-13.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|OpenBLAS/0.3.27-GCC-13.3.0|x|x|x|x|-|x|x|
|OpenBLAS/0.3.24-GCC-13.2.0|x|x|x|x|x|x|x|
|OpenBLAS/0.3.23-GCC-12.3.0|x|x|x|x|x|x|x|
|OpenBLAS/0.3.21-GCC-12.2.0|x|x|x|x|-|-|-|
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -22,4 +22,4 @@ module load Porechop/0.2.4-intel-2019b-Python-3.7.4
| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Porechop/0.2.4-intel-2019b-Python-3.7.4|-|x|x|-|-|-|-|
|Porechop/0.2.4-20240119-GCCcore-12.3.0|-|x|x|-|-|x|x|
|Porechop/0.2.4-20240119-GCCcore-12.3.0|x|x|x|x|-|x|x|
Original file line number Diff line number Diff line change
Expand Up @@ -14,13 +14,14 @@ The overview below shows which SciPy-bundle installations are available per HPC-
To start using SciPy-bundle, load one of these modules using a `module load` command like:

```shell
module load SciPy-bundle/2023.11-gfbf-2023b
module load SciPy-bundle/2024.05-gfbf-2024a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|SciPy-bundle/2024.05-gfbf-2024a|x|x|x|x|-|x|-|
|SciPy-bundle/2023.11-gfbf-2023b|x|x|x|x|x|x|x|
|SciPy-bundle/2023.07-iimkl-2023a|-|-|-|-|x|-|-|
|SciPy-bundle/2023.07-gfbf-2023a|x|x|x|x|x|x|x|
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -14,12 +14,13 @@ The overview below shows which Stacks installations are available per HPC-UGent
To start using Stacks, load one of these modules using a `module load` command like:

```shell
module load Stacks/2.53-iccifort-2019.5.281
module load Stacks/2.68-foss-2023a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Stacks/2.68-foss-2023a|x|x|x|x|-|x|x|
|Stacks/2.53-iccifort-2019.5.281|-|x|x|-|-|-|-|
|Stacks/2.5-iccifort-2019.5.281|-|x|x|-|-|-|-|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/gfbf.md
Original file line number Diff line number Diff line change
Expand Up @@ -14,13 +14,14 @@ The overview below shows which gfbf installations are available per HPC-UGent Ti
To start using gfbf, load one of these modules using a `module load` command like:

```shell
module load gfbf/2023b
module load gfbf/2024a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|gfbf/2024a|x|x|x|x|-|x|x|
|gfbf/2023b|x|x|x|x|x|x|x|
|gfbf/2023a|x|x|x|x|x|x|x|
|gfbf/2022b|x|x|x|x|-|-|-|
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ module load gzip/1.13-GCCcore-13.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|gzip/1.13-GCCcore-13.3.0|x|x|x|x|-|x|-|
|gzip/1.13-GCCcore-13.3.0|x|x|x|x|-|x|x|
|gzip/1.13-GCCcore-13.2.0|x|x|x|x|x|x|x|
|gzip/1.12-GCCcore-12.3.0|x|x|x|x|x|x|x|
|gzip/1.12-GCCcore-12.2.0|x|x|x|x|-|x|-|
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ module load hypothesis/6.103.1-GCCcore-13.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|hypothesis/6.103.1-GCCcore-13.3.0|x|x|x|x|-|x|-|
|hypothesis/6.103.1-GCCcore-13.3.0|x|x|x|x|-|x|x|
|hypothesis/6.90.0-GCCcore-13.2.0|x|x|x|x|x|x|x|
|hypothesis/6.82.0-GCCcore-12.3.0|x|x|x|x|x|x|x|
|hypothesis/6.68.2-GCCcore-12.2.0|x|x|x|x|-|x|-|
Expand Down
2 changes: 1 addition & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/lz4.md
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ module load lz4/1.9.4-GCCcore-13.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|lz4/1.9.4-GCCcore-13.3.0|x|x|x|x|-|x|-|
|lz4/1.9.4-GCCcore-13.3.0|x|x|x|x|-|x|x|
|lz4/1.9.4-GCCcore-13.2.0|x|x|x|x|x|x|x|
|lz4/1.9.4-GCCcore-12.3.0|x|x|x|x|x|x|x|
|lz4/1.9.4-GCCcore-12.2.0|x|x|x|x|-|x|-|
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ module load meson-python/0.16.0-GCCcore-13.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|meson-python/0.16.0-GCCcore-13.3.0|x|x|x|x|-|x|-|
|meson-python/0.16.0-GCCcore-13.3.0|x|x|x|x|-|x|x|
|meson-python/0.15.0-GCCcore-13.2.0|x|x|x|x|x|x|x|
|meson-python/0.13.2-GCCcore-12.3.0|x|x|x|x|x|x|x|
|meson-python/0.11.0-GCCcore-12.2.0|x|x|x|x|-|x|-|
Original file line number Diff line number Diff line change
Expand Up @@ -14,11 +14,12 @@ The overview below shows which mosdepth installations are available per HPC-UGen
To start using mosdepth, load one of these modules using a `module load` command like:

```shell
module load mosdepth/0.3.3-GCC-11.2.0
module load mosdepth/0.3.9-GCC-12.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|mosdepth/0.3.9-GCC-12.3.0|x|x|x|x|-|x|x|
|mosdepth/0.3.3-GCC-11.2.0|x|x|x|-|-|-|-|
Original file line number Diff line number Diff line change
Expand Up @@ -21,4 +21,4 @@ module load pplacer/1.1.alpha19

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|pplacer/1.1.alpha19|x|x|x|x|-|x|x|
|pplacer/1.1.alpha19|x|x|x|x|x|x|x|
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ module load prodigal/2.6.3-GCCcore-12.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|prodigal/2.6.3-GCCcore-12.3.0|x|x|x|x|-|x|x|
|prodigal/2.6.3-GCCcore-12.3.0|x|x|x|x|x|x|x|
|prodigal/2.6.3-GCCcore-12.2.0|x|x|x|x|-|x|-|
|prodigal/2.6.3-GCCcore-11.3.0|x|x|x|x|-|x|-|
|prodigal/2.6.3-GCCcore-11.2.0|x|x|x|x|-|-|-|
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ module load pybind11/2.12.0-GCC-13.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|pybind11/2.12.0-GCC-13.3.0|x|x|x|x|-|x|-|
|pybind11/2.12.0-GCC-13.3.0|x|x|x|x|-|x|x|
|pybind11/2.11.1-GCCcore-13.2.0|x|x|x|x|x|x|x|
|pybind11/2.11.1-GCCcore-12.3.0|x|x|x|x|x|x|x|
|pybind11/2.10.3-GCCcore-12.2.0|x|x|x|x|-|x|-|
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -25,5 +25,5 @@ module load pydantic/2.7.4-GCCcore-13.2.0
|pydantic/2.6.4-GCCcore-13.2.0|x|x|x|x|-|-|x|
|pydantic/2.5.3-GCCcore-12.3.0|x|x|x|x|x|x|x|
|pydantic/2.5.3-GCCcore-12.2.0|x|x|x|x|-|-|-|
|pydantic/1.10.13-GCCcore-12.3.0|x|x|x|x|-|x|x|
|pydantic/1.10.13-GCCcore-12.3.0|x|x|x|x|x|x|x|
|pydantic/1.10.4-GCCcore-11.3.0|x|x|x|x|-|-|-|
24 changes: 24 additions & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/skani.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,24 @@
---
hide:
- toc
---

skani
=====

# Available modules


The overview below shows which skani installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).

To start using skani, load one of these modules using a `module load` command like:

```shell
module load skani/0.2.2-GCCcore-12.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|skani/0.2.2-GCCcore-12.3.0|x|x|x|x|x|x|x|
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ module load zstd/1.5.6-GCCcore-13.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|zstd/1.5.6-GCCcore-13.3.0|x|x|x|x|-|x|-|
|zstd/1.5.6-GCCcore-13.3.0|x|x|x|x|-|x|x|
|zstd/1.5.5-GCCcore-13.2.0|x|x|x|x|x|x|x|
|zstd/1.5.5-GCCcore-12.3.0|x|x|x|x|x|x|x|
|zstd/1.5.2-GCCcore-12.2.0|x|x|x|x|-|x|-|
Expand Down
2 changes: 1 addition & 1 deletion mkdocs/extra/gent.yml
Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,7 @@ hpcname: hpcugent
loginnode: login.hpc.ugent.be
loginhost: gligar07.gastly.os
altloginhost: gligar08.gastly.os
modules_last_updated: Wed, 06 Nov 2024 at 15:45:02 CET # This line is automatically updated by scripts/available_modules/available_modules.py
modules_last_updated: Thu, 07 Nov 2024 at 15:44:46 CET # This line is automatically updated by scripts/available_modules/available_modules.py
# get these with ssh-keyscan gligar01.ugent.be > file
# ssh-keygen -l -f file
# ssh-keygen -l -f file -E md5
Expand Down

0 comments on commit 989e615

Please sign in to comment.