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Auto Update Modules [5 October 2024, 15:43] #749

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Auto Update Modules [5 October 2024, 15:43] #749

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2 changes: 1 addition & 1 deletion mkdocs/docs/HPC/only/gent/available_software/data/json_data.json
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2 changes: 1 addition & 1 deletion mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json
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3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/ABRicate.md
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Expand Up @@ -14,11 +14,12 @@ The overview below shows which ABRicate installations are available per HPC-UGen
To start using ABRicate, load one of these modules using a `module load` command like:

```shell
module load ABRicate/0.9.9-gompi-2019b
module load ABRicate/1.0.0-gompi-2023a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|ABRicate/1.0.0-gompi-2023a|x|x|x|x|x|x|x|
|ABRicate/0.9.9-gompi-2019b|-|x|x|-|x|-|-|
24 changes: 24 additions & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/AMRFinderPlus.md
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---
hide:
- toc
---

AMRFinderPlus
=============

# Available modules


The overview below shows which AMRFinderPlus installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).

To start using AMRFinderPlus, load one of these modules using a `module load` command like:

```shell
module load AMRFinderPlus/3.12.8-gompi-2023a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|AMRFinderPlus/3.12.8-gompi-2023a|x|x|x|x|x|x|x|
10 changes: 6 additions & 4 deletions mkdocs/docs/HPC/only/gent/available_software/detail/GROMACS.md
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Expand Up @@ -14,17 +14,19 @@ The overview below shows which GROMACS installations are available per HPC-UGent
To start using GROMACS, load one of these modules using a `module load` command like:

```shell
module load GROMACS/2024.2-foss-2023b-CUDA-12.5.0
module load GROMACS/2024.3-foss-2023b-PLUMED-2.9.2
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|GROMACS/2024.3-foss-2023b-PLUMED-2.9.2|-|-|-|-|-|x|x|
|GROMACS/2024.3-foss-2023b|-|-|-|-|-|x|x|
|GROMACS/2024.2-foss-2023b-CUDA-12.5.0|x|-|x|-|x|-|-|
|GROMACS/2024.1-foss-2023b|-|-|-|-|-|x|-|
|GROMACS/2023.3-foss-2023a-PLUMED-2.9.0|-|-|-|-|-|x|-|
|GROMACS/2023.3-foss-2023a|-|-|-|-|-|x|-|
|GROMACS/2024.1-foss-2023b|-|-|-|-|-|x|x|
|GROMACS/2023.3-foss-2023a-PLUMED-2.9.0|-|-|-|-|-|x|x|
|GROMACS/2023.3-foss-2023a|-|-|-|-|-|x|x|
|GROMACS/2021.3-foss-2021a-CUDA-11.3.1-PLUMED-2.7.2|x|-|-|-|x|-|-|
|GROMACS/2021.3-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|
|GROMACS/2021.2-fosscuda-2020b|x|-|-|-|x|-|-|
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2 changes: 1 addition & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/IQ-TREE.md
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Expand Up @@ -21,7 +21,7 @@ module load IQ-TREE/2.3.5-gompi-2023a

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|IQ-TREE/2.3.5-gompi-2023a|x|x|x|x|x|-|-|
|IQ-TREE/2.3.5-gompi-2023a|x|x|x|x|x|x|x|
|IQ-TREE/2.2.2.6-gompi-2022b|x|x|x|x|x|-|-|
|IQ-TREE/2.2.2.6-gompi-2022a|x|x|x|x|x|-|-|
|IQ-TREE/2.2.2.3-gompi-2022a|x|x|x|x|x|-|-|
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2 changes: 1 addition & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/LSD2.md
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Expand Up @@ -21,7 +21,7 @@ module load LSD2/2.4.1-GCCcore-12.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|LSD2/2.4.1-GCCcore-12.3.0|x|x|x|x|x|-|-|
|LSD2/2.4.1-GCCcore-12.3.0|x|x|x|x|x|x|x|
|LSD2/2.4.1-GCCcore-12.2.0|x|x|x|x|x|-|-|
|LSD2/2.3-GCCcore-11.3.0|x|x|x|x|x|-|-|
|LSD2/2.3-GCCcore-11.2.0|x|x|x|-|x|-|-|
2 changes: 1 addition & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/NextGenMap.md
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Expand Up @@ -21,5 +21,5 @@ module load NextGenMap/0.5.5-GCC-12.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|NextGenMap/0.5.5-GCC-12.3.0|x|x|x|x|x|-|-|
|NextGenMap/0.5.5-GCC-12.3.0|x|x|x|x|x|x|x|
|NextGenMap/0.5.5-GCC-11.2.0|x|x|x|-|x|-|-|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/PLUMED.md
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which PLUMED installations are available per HPC-UGent
To start using PLUMED, load one of these modules using a `module load` command like:

```shell
module load PLUMED/2.9.0-foss-2023a
module load PLUMED/2.9.2-foss-2023b
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|PLUMED/2.9.2-foss-2023b|-|-|-|-|-|x|x|
|PLUMED/2.9.0-foss-2023a|x|x|x|x|x|x|x|
|PLUMED/2.9.0-foss-2022b|x|x|x|x|x|-|-|
|PLUMED/2.8.1-foss-2022a|x|x|x|x|x|-|-|
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24 changes: 24 additions & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/SURVIVOR.md
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---
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---

SURVIVOR
========

# Available modules


The overview below shows which SURVIVOR installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).

To start using SURVIVOR, load one of these modules using a `module load` command like:

```shell
module load SURVIVOR/1.0.7-20231201-GCC-13.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|SURVIVOR/1.0.7-20231201-GCC-13.3.0|x|x|x|x|x|x|x|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/any2fasta.md
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Expand Up @@ -14,12 +14,13 @@ The overview below shows which any2fasta installations are available per HPC-UGe
To start using any2fasta, load one of these modules using a `module load` command like:

```shell
module load any2fasta/0.4.2-GCCcore-10.2.0
module load any2fasta/0.4.2-GCCcore-12.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|any2fasta/0.4.2-GCCcore-12.3.0|x|x|x|x|x|x|x|
|any2fasta/0.4.2-GCCcore-10.2.0|-|x|x|-|x|-|-|
|any2fasta/0.4.2-GCCcore-8.3.0|-|x|x|-|x|-|-|
24 changes: 24 additions & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/cp2k-input-tools.md
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cp2k-input-tools
================

# Available modules


The overview below shows which cp2k-input-tools installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).

To start using cp2k-input-tools, load one of these modules using a `module load` command like:

```shell
module load cp2k-input-tools/0.9.1-foss-2023a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|cp2k-input-tools/0.9.1-foss-2023a|x|x|x|x|x|x|x|
2 changes: 1 addition & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/ngmlr.md
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Expand Up @@ -21,4 +21,4 @@ module load ngmlr/0.2.7-foss-2023a

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|ngmlr/0.2.7-foss-2023a|x|x|x|x|x|-|-|
|ngmlr/0.2.7-foss-2023a|x|x|x|x|x|x|x|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/phonopy.md
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Expand Up @@ -14,11 +14,12 @@ The overview below shows which phonopy installations are available per HPC-UGent
To start using phonopy, load one of these modules using a `module load` command like:

```shell
module load phonopy/2.7.1-intel-2020a-Python-3.8.2
module load phonopy/2.20.0-foss-2023a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|phonopy/2.20.0-foss-2023a|x|x|x|x|x|x|x|
|phonopy/2.7.1-intel-2020a-Python-3.8.2|x|x|x|x|x|-|-|
2 changes: 1 addition & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/pyparsing.md
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Expand Up @@ -21,5 +21,5 @@ module load pyparsing/3.1.1-GCCcore-12.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|pyparsing/3.1.1-GCCcore-12.3.0|x|x|x|x|x|-|-|
|pyparsing/3.1.1-GCCcore-12.3.0|x|x|x|x|x|x|x|
|pyparsing/2.4.6-GCCcore-8.3.0-Python-2.7.16|-|x|-|-|-|-|-|
2 changes: 1 addition & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/read2tree.md
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Expand Up @@ -21,4 +21,4 @@ module load read2tree/0.1.5-foss-2023a

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|read2tree/0.1.5-foss-2023a|x|x|x|x|x|-|-|
|read2tree/0.1.5-foss-2023a|x|x|x|x|x|x|x|
2 changes: 1 addition & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/scikit-build-core.md
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Expand Up @@ -21,5 +21,5 @@ module load scikit-build-core/0.9.3-GCCcore-13.2.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|scikit-build-core/0.9.3-GCCcore-13.2.0|x|-|x|-|x|x|-|
|scikit-build-core/0.9.3-GCCcore-13.2.0|x|-|x|-|x|x|x|
|scikit-build-core/0.5.0-GCCcore-12.3.0|x|x|x|x|x|x|x|
2 changes: 1 addition & 1 deletion mkdocs/extra/gent.yml
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Expand Up @@ -16,7 +16,7 @@ hpcname: hpcugent
loginnode: login.hpc.ugent.be
loginhost: gligar07.gastly.os
altloginhost: gligar08.gastly.os
modules_last_updated: Thu, 03 Oct 2024 at 15:44:20 CEST # This line is automatically updated by scripts/available_modules/available_modules.py
modules_last_updated: Sat, 05 Oct 2024 at 15:44:20 CEST # This line is automatically updated by scripts/available_modules/available_modules.py
# get these with ssh-keyscan gligar01.ugent.be > file
# ssh-keygen -l -f file
# ssh-keygen -l -f file -E md5
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