Update Modules [2 December 2024, 15:43]

hpcugent · Dec 2, 2024 · d765f9a · d765f9a
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diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json
diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BEDTools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BEDTools.md
@@ -14,13 +14,14 @@ The overview below shows which BEDTools installations are available per HPC-UGen
 To start using BEDTools, load one of these modules using a `module load` command like:
 
 ```shell
-module load BEDTools/2.31.0-GCC-12.3.0
+module load BEDTools/2.31.1-GCC-13.2.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|BEDTools/2.31.1-GCC-13.2.0|-|x|x|x|-|x|x|
 |BEDTools/2.31.0-GCC-12.3.0|x|x|x|x|x|x|x|
 |BEDTools/2.30.0-GCC-12.2.0|-|x|x|x|-|-|-|
 |BEDTools/2.30.0-GCC-11.3.0|-|x|x|x|-|x|-|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BamTools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BamTools.md
@@ -14,13 +14,14 @@ The overview below shows which BamTools installations are available per HPC-UGen
 To start using BamTools, load one of these modules using a `module load` command like:
 
 ```shell
-module load BamTools/2.5.2-GCC-12.3.0
+module load BamTools/2.5.2-GCC-13.2.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|BamTools/2.5.2-GCC-13.2.0|-|x|x|x|-|x|x|
 |BamTools/2.5.2-GCC-12.3.0|x|x|x|x|x|x|x|
 |BamTools/2.5.2-GCC-12.2.0|-|x|x|x|-|-|-|
 |BamTools/2.5.2-GCC-11.3.0|-|x|x|x|-|x|-|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MATES.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MATES.md
@@ -14,12 +14,13 @@ The overview below shows which MATES installations are available per HPC-UGent T
 To start using MATES, load one of these modules using a `module load` command like:
 
 ```shell
-module load MATES/0.1.2-20240813-foss-2023a-CUDA-12.1.1
+module load MATES/0.1.5-20241121-foss-2023b
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|MATES/0.1.5-20241121-foss-2023b|-|x|x|x|-|x|x|
 |MATES/0.1.2-20240813-foss-2023a-CUDA-12.1.1|x|-|x|-|x|-|-|
 |MATES/0.1.2-20240813-foss-2023a|-|x|x|x|-|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SAMtools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SAMtools.md
@@ -14,13 +14,14 @@ The overview below shows which SAMtools installations are available per HPC-UGen
 To start using SAMtools, load one of these modules using a `module load` command like:
 
 ```shell
-module load SAMtools/1.18-GCC-12.3.0
+module load SAMtools/1.19.2-GCC-13.2.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|SAMtools/1.19.2-GCC-13.2.0|-|x|x|x|-|x|x|
 |SAMtools/1.18-GCC-12.3.0|x|x|x|x|x|x|x|
 |SAMtools/1.17-GCC-12.2.0|-|x|x|x|-|-|-|
 |SAMtools/1.16.1-GCC-11.3.0|-|x|x|x|-|x|-|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Spectre.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Spectre.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+Spectre
+=======
+
+# Available modules
+
+
+The overview below shows which Spectre installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using Spectre, load one of these modules using a `module load` command like:
+
+```shell
+module load Spectre/0.2.1-foss-2023a
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*  
+
+| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|Spectre/0.2.1-foss-2023a|-|x|x|x|-|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/anndata.md b/mkdocs/docs/HPC/only/gent/available_software/detail/anndata.md
@@ -14,13 +14,14 @@ The overview below shows which anndata installations are available per HPC-UGent
 To start using anndata, load one of these modules using a `module load` command like:
 
 ```shell
-module load anndata/0.10.5.post1-foss-2023a
+module load anndata/0.11.1-foss-2023b
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|anndata/0.11.1-foss-2023b|-|x|x|x|-|x|x|
 |anndata/0.10.5.post1-foss-2023a|x|x|x|x|x|x|x|
 |anndata/0.9.2-foss-2021b|-|x|x|x|-|-|-|
 |anndata/0.9.2-foss-2021a|-|x|x|x|-|-|-|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pybedtools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pybedtools.md
@@ -14,13 +14,14 @@ The overview below shows which pybedtools installations are available per HPC-UG
 To start using pybedtools, load one of these modules using a `module load` command like:
 
 ```shell
-module load pybedtools/0.9.1-foss-2023a
+module load pybedtools/0.10.0-foss-2023b
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|pybedtools/0.10.0-foss-2023b|-|x|x|x|-|x|x|
 |pybedtools/0.9.1-foss-2023a|x|x|x|x|x|x|x|
 |pybedtools/0.9.0-GCC-12.2.0|-|x|x|x|-|-|-|
 |pybedtools/0.9.0-GCC-11.3.0|-|x|x|x|-|-|-|

diff --git a/mkdocs/extra/gent.yml b/mkdocs/extra/gent.yml
@@ -16,7 +16,7 @@ hpcname: hpcugent
 loginnode: login.hpc.ugent.be
 loginhost: gligar07.gastly.os
 altloginhost: gligar08.gastly.os
-modules_last_updated: Wed, 27 Nov 2024 at 15:44:43 CET # This line is automatically updated by scripts/available_modules/available_modules.py
+modules_last_updated: Mon, 02 Dec 2024 at 15:44:38 CET # This line is automatically updated by scripts/available_modules/available_modules.py
 # get these with ssh-keyscan gligar01.ugent.be > file
 # ssh-keygen -l -f file
 # ssh-keygen -l -f file -E md5