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Update Modules [25 October 2024, 15:43]
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which AUGUSTUS installations are available per HPC-UGen
To start using AUGUSTUS, load one of these modules using a `module load` command like:

```shell
module load AUGUSTUS/3.4.0-foss-2021b
module load AUGUSTUS/3.5.0-foss-2023a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|AUGUSTUS/3.5.0-foss-2023a|x|x|x|x|-|-|x|
|AUGUSTUS/3.4.0-foss-2021b|x|x|x|x|-|-|-|
|AUGUSTUS/3.4.0-foss-2020b|x|x|x|x|-|-|-|
|AUGUSTUS/3.3.3-intel-2019b|-|x|x|-|-|-|-|
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Expand Up @@ -28,7 +28,7 @@ module load Autoconf/2.72-GCCcore-13.3.0
|Autoconf/2.71-GCCcore-11.3.0|x|x|x|x|-|x|-|
|Autoconf/2.71-GCCcore-11.2.0|x|x|x|x|-|x|-|
|Autoconf/2.71-GCCcore-10.3.0|x|x|x|x|-|-|-|
|Autoconf/2.71|x|x|x|x|-|x|-|
|Autoconf/2.71|x|x|x|x|-|x|x|
|Autoconf/2.69-GCCcore-10.2.0|x|x|x|x|-|-|-|
|Autoconf/2.69-GCCcore-9.3.0|x|x|x|x|-|-|-|
|Autoconf/2.69-GCCcore-8.3.0|x|x|x|x|-|-|-|
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3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/BLAT.md
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which BLAT installations are available per HPC-UGent Ti
To start using BLAT, load one of these modules using a `module load` command like:

```shell
module load BLAT/3.7-GCC-11.3.0
module load BLAT/3.7-GCC-12.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|BLAT/3.7-GCC-12.3.0|x|x|x|x|-|x|x|
|BLAT/3.7-GCC-11.3.0|x|x|x|x|-|-|-|
|BLAT/3.7-GCC-11.2.0|x|x|x|x|-|-|-|
|BLAT/3.5-GCC-9.3.0|-|x|x|-|-|-|-|
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which Bowtie2 installations are available per HPC-UGent
To start using Bowtie2, load one of these modules using a `module load` command like:

```shell
module load Bowtie2/2.4.5-GCC-11.3.0
module load Bowtie2/2.5.1-GCC-12.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Bowtie2/2.5.1-GCC-12.3.0|x|x|x|x|-|x|x|
|Bowtie2/2.4.5-GCC-11.3.0|x|x|x|x|-|-|-|
|Bowtie2/2.4.4-GCC-11.2.0|x|x|x|x|-|-|-|
|Bowtie2/2.4.2-GCC-10.2.0|-|x|x|x|-|-|-|
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Expand Up @@ -14,11 +14,12 @@ The overview below shows which CodingQuarry installations are available per HPC-
To start using CodingQuarry, load one of these modules using a `module load` command like:

```shell
module load CodingQuarry/2.0-foss-2021b
module load CodingQuarry/2.0-foss-2023a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|CodingQuarry/2.0-foss-2023a|x|x|x|x|-|x|x|
|CodingQuarry/2.0-foss-2021b|x|x|x|x|-|-|-|
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Expand Up @@ -14,12 +14,13 @@ The overview below shows which DBD-mysql installations are available per HPC-UGe
To start using DBD-mysql, load one of these modules using a `module load` command like:

```shell
module load DBD-mysql/4.050-GCC-11.3.0
module load DBD-mysql/4.050-GCC-12.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|DBD-mysql/4.050-GCC-12.3.0|x|x|x|x|-|x|x|
|DBD-mysql/4.050-GCC-11.3.0|x|x|x|x|-|-|-|
|DBD-mysql/4.050-GCC-11.2.0|x|x|x|x|-|-|-|
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Expand Up @@ -23,6 +23,7 @@ module load GATK/4.6.0.0-GCCcore-13.2.0-Java-17
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|GATK/4.6.0.0-GCCcore-13.2.0-Java-17|x|x|x|x|-|x|x|
|GATK/4.4.0.0-GCCcore-12.3.0-Java-17|x|x|x|x|-|x|x|
|GATK/4.3.0.0-GCCcore-12.3.0-Java-11|x|x|x|x|-|x|x|
|GATK/4.3.0.0-GCCcore-11.3.0-Java-11|x|x|x|x|-|-|-|
|GATK/4.2.3.0-GCCcore-11.2.0-Java-11|x|x|x|x|-|-|-|
|GATK/4.2.0.0-GCCcore-10.2.0-Java-11|-|x|x|x|-|-|-|
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which GeneMark-ET installations are available per HPC-U
To start using GeneMark-ET, load one of these modules using a `module load` command like:

```shell
module load GeneMark-ET/4.71-GCCcore-11.3.0
module load GeneMark-ET/4.72-GCCcore-12.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|GeneMark-ET/4.72-GCCcore-12.3.0|x|x|x|x|-|-|x|
|GeneMark-ET/4.71-GCCcore-11.3.0|x|x|x|x|-|-|-|
|GeneMark-ET/4.71-GCCcore-11.2.0|x|x|x|x|-|-|-|
|GeneMark-ET/4.65-GCCcore-10.2.0|x|x|x|x|-|-|-|
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which GlimmerHMM installations are available per HPC-UG
To start using GlimmerHMM, load one of these modules using a `module load` command like:

```shell
module load GlimmerHMM/3.0.4c-GCC-11.2.0
module load GlimmerHMM/3.0.4c-GCC-12.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|GlimmerHMM/3.0.4c-GCC-12.3.0|x|x|x|x|-|x|x|
|GlimmerHMM/3.0.4c-GCC-11.2.0|x|x|x|x|-|-|-|
|GlimmerHMM/3.0.4c-GCC-10.2.0|-|x|x|x|-|-|-|
|GlimmerHMM/3.0.4c-GCC-8.3.0|-|x|x|-|-|-|-|
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which HISAT2 installations are available per HPC-UGent
To start using HISAT2, load one of these modules using a `module load` command like:

```shell
module load HISAT2/2.2.1-gompi-2022a
module load HISAT2/2.2.1-gompi-2023a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|HISAT2/2.2.1-gompi-2023a|x|x|x|x|-|x|x|
|HISAT2/2.2.1-gompi-2022a|x|x|x|x|-|-|-|
|HISAT2/2.2.1-gompi-2021b|x|x|x|x|-|-|-|
|HISAT2/2.2.1-gompi-2020b|-|x|x|x|-|-|-|
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Expand Up @@ -14,11 +14,12 @@ The overview below shows which Infernal installations are available per HPC-UGen
To start using Infernal, load one of these modules using a `module load` command like:

```shell
module load Infernal/1.1.4-foss-2021b
module load Infernal/1.1.5-foss-2023a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Infernal/1.1.5-foss-2023a|x|x|x|x|-|x|x|
|Infernal/1.1.4-foss-2021b|x|x|x|-|-|-|-|
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which Jellyfish installations are available per HPC-UGe
To start using Jellyfish, load one of these modules using a `module load` command like:

```shell
module load Jellyfish/2.3.0-GCC-11.3.0
module load Jellyfish/2.3.1-GCC-12.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Jellyfish/2.3.1-GCC-12.3.0|x|x|x|x|-|x|x|
|Jellyfish/2.3.0-GCC-11.3.0|x|x|x|x|-|-|-|
|Jellyfish/2.3.0-GCC-11.2.0|x|x|x|x|-|-|-|
|Jellyfish/2.3.0-GCC-8.3.0|-|x|x|-|-|-|-|
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Expand Up @@ -22,6 +22,7 @@ module load Kent_tools/20190326-linux.x86_64
| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Kent_tools/20190326-linux.x86_64|-|-|x|-|-|-|-|
|Kent_tools/468-GCC-12.3.0|x|x|x|x|-|-|-|
|Kent_tools/422-GCC-11.2.0|x|x|x|x|-|-|-|
|Kent_tools/411-GCC-10.2.0|-|x|x|x|-|-|-|
|Kent_tools/401-gompi-2019b|-|x|x|-|-|-|-|
2 changes: 1 addition & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/M4.md
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Expand Up @@ -33,5 +33,5 @@ module load M4/1.4.19-GCCcore-13.3.0
|M4/1.4.18-GCCcore-9.3.0|x|x|x|x|-|-|-|
|M4/1.4.18-GCCcore-8.3.0|x|x|x|x|-|-|-|
|M4/1.4.18-GCCcore-8.2.0|-|x|-|-|-|-|-|
|M4/1.4.18|x|x|x|x|-|x|-|
|M4/1.4.18|x|x|x|x|-|x|x|
|M4/1.4.17|x|x|x|x|-|-|-|
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Expand Up @@ -14,11 +14,12 @@ The overview below shows which Proteinortho installations are available per HPC-
To start using Proteinortho, load one of these modules using a `module load` command like:

```shell
module load Proteinortho/6.2.3-gompi-2021b
module load Proteinortho/6.3.2-gompi-2023a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Proteinortho/6.3.2-gompi-2023a|x|x|x|x|-|x|x|
|Proteinortho/6.2.3-gompi-2021b|x|x|x|x|-|-|-|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/RSEM.md
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Expand Up @@ -14,12 +14,13 @@ The overview below shows which RSEM installations are available per HPC-UGent Ti
To start using RSEM, load one of these modules using a `module load` command like:

```shell
module load RSEM/1.3.3-foss-2022a
module load RSEM/1.3.3-foss-2023a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|RSEM/1.3.3-foss-2023a|x|x|x|x|-|x|x|
|RSEM/1.3.3-foss-2022a|x|x|x|x|-|-|-|
|RSEM/1.3.3-foss-2021b|x|x|x|x|-|-|-|
24 changes: 24 additions & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/SNAP-HMM.md
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@@ -0,0 +1,24 @@
---
hide:
- toc
---

SNAP-HMM
========

# Available modules


The overview below shows which SNAP-HMM installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).

To start using SNAP-HMM, load one of these modules using a `module load` command like:

```shell
module load SNAP-HMM/20221022-GCC-12.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|SNAP-HMM/20221022-GCC-12.3.0|x|x|x|x|-|x|x|
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Expand Up @@ -24,7 +24,7 @@ module load STAR/2.7.11b_alpha_2024-02-09-GCC-12.3.0
|STAR/2.7.11b_alpha_2024-02-09-GCC-12.3.0|x|x|x|x|-|x|x|
|STAR/2.7.11b-GCC-13.2.0|x|x|x|x|-|x|x|
|STAR/2.7.11b-GCC-12.3.0|x|x|x|x|-|-|x|
|STAR/2.7.11a-GCC-12.3.0|x|x|x|x|-|-|x|
|STAR/2.7.11a-GCC-12.3.0|x|x|x|x|-|x|x|
|STAR/2.7.10b-GCC-11.3.0|x|x|x|x|-|-|-|
|STAR/2.7.9a-GCC-11.2.0|x|x|x|x|-|-|-|
|STAR/2.7.6a-GCC-10.2.0|-|x|x|x|-|-|-|
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which StringTie installations are available per HPC-UGe
To start using StringTie, load one of these modules using a `module load` command like:

```shell
module load StringTie/2.2.1-GCC-11.2.0-Python-2.7.18
module load StringTie/2.2.3-GCC-12.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|StringTie/2.2.3-GCC-12.3.0|x|x|x|x|-|x|x|
|StringTie/2.2.1-GCC-11.2.0-Python-2.7.18|x|x|x|x|-|-|-|
|StringTie/2.2.1-GCC-11.2.0|x|x|x|x|-|-|-|
|StringTie/2.1.1-GCC-8.3.0|-|x|x|-|-|-|-|
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Expand Up @@ -14,12 +14,13 @@ The overview below shows which Subread installations are available per HPC-UGent
To start using Subread, load one of these modules using a `module load` command like:

```shell
module load Subread/2.0.3-GCC-9.3.0
module load Subread/2.0.6-GCC-12.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Subread/2.0.6-GCC-12.3.0|-|-|x|x|-|x|x|
|Subread/2.0.3-GCC-9.3.0|-|x|x|-|-|-|-|
|Subread/2.0.0-GCC-8.3.0|-|x|x|-|-|-|-|
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which Trinity installations are available per HPC-UGent
To start using Trinity, load one of these modules using a `module load` command like:

```shell
module load Trinity/2.15.1-foss-2022a
module load Trinity/2.15.2-foss-2023a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Trinity/2.15.2-foss-2023a|x|x|x|x|-|-|x|
|Trinity/2.15.1-foss-2022a|x|x|x|x|-|-|-|
|Trinity/2.15.1-foss-2021b|x|x|x|x|-|-|-|
|Trinity/2.10.0-foss-2019b-Python-3.7.4|-|x|x|-|-|-|-|
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Expand Up @@ -35,7 +35,7 @@ module load binutils/2.42-GCCcore-13.3.0
|binutils/2.36.1-GCCcore-10.3.0|x|x|x|x|-|-|-|
|binutils/2.36.1|x|x|x|x|-|-|-|
|binutils/2.35-GCCcore-10.2.0|x|x|x|x|-|-|-|
|binutils/2.35|x|x|x|x|-|-|-|
|binutils/2.35|x|x|x|x|-|-|x|
|binutils/2.34-GCCcore-9.3.0|x|x|x|x|-|-|-|
|binutils/2.34|x|x|x|x|-|-|-|
|binutils/2.32-GCCcore-8.3.0|x|x|x|x|-|-|-|
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which eggnog-mapper installations are available per HPC
To start using eggnog-mapper, load one of these modules using a `module load` command like:

```shell
module load eggnog-mapper/2.1.10-foss-2020b
module load eggnog-mapper/2.1.12-foss-2023a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|eggnog-mapper/2.1.12-foss-2023a|x|x|x|x|-|x|x|
|eggnog-mapper/2.1.10-foss-2020b|x|x|x|x|-|-|-|
|eggnog-mapper/2.1.7-foss-2021b|x|x|x|x|-|-|-|
|eggnog-mapper/2.1.4-foss-2020b|-|x|x|x|-|-|-|
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Expand Up @@ -14,11 +14,12 @@ The overview below shows which funannotate installations are available per HPC-U
To start using funannotate, load one of these modules using a `module load` command like:

```shell
module load funannotate/1.8.13-foss-2021b
module load funannotate/1.8.17-foss-2023a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|funannotate/1.8.17-foss-2023a|x|x|x|x|-|-|-|
|funannotate/1.8.13-foss-2021b|x|x|x|x|-|-|-|
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which kallisto installations are available per HPC-UGen
To start using kallisto, load one of these modules using a `module load` command like:

```shell
module load kallisto/0.48.0-gompi-2022a
module load kallisto/0.51.1-gompi-2023a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|kallisto/0.51.1-gompi-2023a|x|x|x|x|-|x|x|
|kallisto/0.48.0-gompi-2022a|x|x|x|x|-|-|-|
|kallisto/0.48.0-gompi-2021b|x|x|x|x|-|-|-|
|kallisto/0.46.1-intel-2020a|-|x|-|-|-|-|-|
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which lpsolve installations are available per HPC-UGent
To start using lpsolve, load one of these modules using a `module load` command like:

```shell
module load lpsolve/5.5.2.11-GCC-11.2.0
module load lpsolve/5.5.2.11-GCC-12.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|lpsolve/5.5.2.11-GCC-12.3.0|x|x|x|x|-|-|x|
|lpsolve/5.5.2.11-GCC-11.2.0|x|x|x|x|-|-|-|
|lpsolve/5.5.2.11-GCC-10.2.0|x|x|x|x|-|-|-|
|lpsolve/5.5.2.5-iccifort-2019.5.281|-|x|x|-|-|-|-|
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which molmod installations are available per HPC-UGent
To start using molmod, load one of these modules using a `module load` command like:

```shell
module load molmod/1.4.5-intel-2020a-Python-3.8.2
module load molmod/1.4.8-foss-2023a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|molmod/1.4.8-foss-2023a|-|x|x|x|-|x|x|
|molmod/1.4.5-intel-2020a-Python-3.8.2|x|x|x|x|-|-|-|
|molmod/1.4.5-intel-2019b-Python-3.7.4|-|x|x|-|-|-|-|
|molmod/1.4.5-foss-2019b-Python-3.7.4|-|x|x|-|-|-|-|
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ module load picard/2.25.1-Java-11

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|picard/2.25.1-Java-11|x|x|x|x|-|-|-|
|picard/2.25.1-Java-11|x|x|x|x|-|x|x|
|picard/2.25.0-Java-11|-|x|x|x|-|-|-|
|picard/2.21.6-Java-11|-|x|x|-|-|-|-|
|picard/2.21.1-Java-11|-|-|x|-|-|-|-|
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