Update Modules [5 October 2024, 15:43]

hpcugent · Oct 5, 2024 · bc47565 · bc47565
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diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json
diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ABRicate.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ABRicate.md
@@ -14,11 +14,12 @@ The overview below shows which ABRicate installations are available per HPC-UGen
 To start using ABRicate, load one of these modules using a `module load` command like:
 
 ```shell
-module load ABRicate/0.9.9-gompi-2019b
+module load ABRicate/1.0.0-gompi-2023a
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|ABRicate/1.0.0-gompi-2023a|x|x|x|x|x|x|x|
 |ABRicate/0.9.9-gompi-2019b|-|x|x|-|x|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AMRFinderPlus.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AMRFinderPlus.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+AMRFinderPlus
+=============
+
+# Available modules
+
+
+The overview below shows which AMRFinderPlus installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using AMRFinderPlus, load one of these modules using a `module load` command like:
+
+```shell
+module load AMRFinderPlus/3.12.8-gompi-2023a
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*  
+
+| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|AMRFinderPlus/3.12.8-gompi-2023a|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GROMACS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GROMACS.md
@@ -14,17 +14,19 @@ The overview below shows which GROMACS installations are available per HPC-UGent
 To start using GROMACS, load one of these modules using a `module load` command like:
 
 ```shell
-module load GROMACS/2024.2-foss-2023b-CUDA-12.5.0
+module load GROMACS/2024.3-foss-2023b-PLUMED-2.9.2
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|GROMACS/2024.3-foss-2023b-PLUMED-2.9.2|-|-|-|-|-|x|x|
+|GROMACS/2024.3-foss-2023b|-|-|-|-|-|x|x|
 |GROMACS/2024.2-foss-2023b-CUDA-12.5.0|x|-|x|-|x|-|-|
-|GROMACS/2024.1-foss-2023b|-|-|-|-|-|x|-|
-|GROMACS/2023.3-foss-2023a-PLUMED-2.9.0|-|-|-|-|-|x|-|
-|GROMACS/2023.3-foss-2023a|-|-|-|-|-|x|-|
+|GROMACS/2024.1-foss-2023b|-|-|-|-|-|x|x|
+|GROMACS/2023.3-foss-2023a-PLUMED-2.9.0|-|-|-|-|-|x|x|
+|GROMACS/2023.3-foss-2023a|-|-|-|-|-|x|x|
 |GROMACS/2021.3-foss-2021a-CUDA-11.3.1-PLUMED-2.7.2|x|-|-|-|x|-|-|
 |GROMACS/2021.3-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|
 |GROMACS/2021.2-fosscuda-2020b|x|-|-|-|x|-|-|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/IQ-TREE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/IQ-TREE.md
@@ -21,7 +21,7 @@ module load IQ-TREE/2.3.5-gompi-2023a
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|IQ-TREE/2.3.5-gompi-2023a|x|x|x|x|x|-|-|
+|IQ-TREE/2.3.5-gompi-2023a|x|x|x|x|x|x|x|
 |IQ-TREE/2.2.2.6-gompi-2022b|x|x|x|x|x|-|-|
 |IQ-TREE/2.2.2.6-gompi-2022a|x|x|x|x|x|-|-|
 |IQ-TREE/2.2.2.3-gompi-2022a|x|x|x|x|x|-|-|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LSD2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LSD2.md
@@ -21,7 +21,7 @@ module load LSD2/2.4.1-GCCcore-12.3.0
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|LSD2/2.4.1-GCCcore-12.3.0|x|x|x|x|x|-|-|
+|LSD2/2.4.1-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |LSD2/2.4.1-GCCcore-12.2.0|x|x|x|x|x|-|-|
 |LSD2/2.3-GCCcore-11.3.0|x|x|x|x|x|-|-|
 |LSD2/2.3-GCCcore-11.2.0|x|x|x|-|x|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NextGenMap.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NextGenMap.md
@@ -21,5 +21,5 @@ module load NextGenMap/0.5.5-GCC-12.3.0
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|NextGenMap/0.5.5-GCC-12.3.0|x|x|x|x|x|-|-|
+|NextGenMap/0.5.5-GCC-12.3.0|x|x|x|x|x|x|x|
 |NextGenMap/0.5.5-GCC-11.2.0|x|x|x|-|x|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PLUMED.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PLUMED.md
@@ -14,13 +14,14 @@ The overview below shows which PLUMED installations are available per HPC-UGent
 To start using PLUMED, load one of these modules using a `module load` command like:
 
 ```shell
-module load PLUMED/2.9.0-foss-2023a
+module load PLUMED/2.9.2-foss-2023b
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|PLUMED/2.9.2-foss-2023b|-|-|-|-|-|x|x|
 |PLUMED/2.9.0-foss-2023a|x|x|x|x|x|x|x|
 |PLUMED/2.9.0-foss-2022b|x|x|x|x|x|-|-|
 |PLUMED/2.8.1-foss-2022a|x|x|x|x|x|-|-|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SURVIVOR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SURVIVOR.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+SURVIVOR
+========
+
+# Available modules
+
+
+The overview below shows which SURVIVOR installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using SURVIVOR, load one of these modules using a `module load` command like:
+
+```shell
+module load SURVIVOR/1.0.7-20231201-GCC-13.3.0
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*  
+
+| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|SURVIVOR/1.0.7-20231201-GCC-13.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/any2fasta.md b/mkdocs/docs/HPC/only/gent/available_software/detail/any2fasta.md
@@ -14,12 +14,13 @@ The overview below shows which any2fasta installations are available per HPC-UGe
 To start using any2fasta, load one of these modules using a `module load` command like:
 
 ```shell
-module load any2fasta/0.4.2-GCCcore-10.2.0
+module load any2fasta/0.4.2-GCCcore-12.3.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|any2fasta/0.4.2-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |any2fasta/0.4.2-GCCcore-10.2.0|-|x|x|-|x|-|-|
 |any2fasta/0.4.2-GCCcore-8.3.0|-|x|x|-|x|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cp2k-input-tools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cp2k-input-tools.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+cp2k-input-tools
+================
+
+# Available modules
+
+
+The overview below shows which cp2k-input-tools installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using cp2k-input-tools, load one of these modules using a `module load` command like:
+
+```shell
+module load cp2k-input-tools/0.9.1-foss-2023a
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*  
+
+| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|cp2k-input-tools/0.9.1-foss-2023a|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ngmlr.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ngmlr.md
@@ -21,4 +21,4 @@ module load ngmlr/0.2.7-foss-2023a
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|ngmlr/0.2.7-foss-2023a|x|x|x|x|x|-|-|
+|ngmlr/0.2.7-foss-2023a|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/phonopy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/phonopy.md
@@ -14,11 +14,12 @@ The overview below shows which phonopy installations are available per HPC-UGent
 To start using phonopy, load one of these modules using a `module load` command like:
 
 ```shell
-module load phonopy/2.7.1-intel-2020a-Python-3.8.2
+module load phonopy/2.20.0-foss-2023a
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|phonopy/2.20.0-foss-2023a|x|x|x|x|x|x|x|
 |phonopy/2.7.1-intel-2020a-Python-3.8.2|x|x|x|x|x|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyparsing.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyparsing.md
@@ -21,5 +21,5 @@ module load pyparsing/3.1.1-GCCcore-12.3.0
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|pyparsing/3.1.1-GCCcore-12.3.0|x|x|x|x|x|-|-|
+|pyparsing/3.1.1-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |pyparsing/2.4.6-GCCcore-8.3.0-Python-2.7.16|-|x|-|-|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/read2tree.md b/mkdocs/docs/HPC/only/gent/available_software/detail/read2tree.md
@@ -21,4 +21,4 @@ module load read2tree/0.1.5-foss-2023a
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|read2tree/0.1.5-foss-2023a|x|x|x|x|x|-|-|
+|read2tree/0.1.5-foss-2023a|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-build-core.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-build-core.md
@@ -21,5 +21,5 @@ module load scikit-build-core/0.9.3-GCCcore-13.2.0
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|scikit-build-core/0.9.3-GCCcore-13.2.0|x|-|x|-|x|x|-|
+|scikit-build-core/0.9.3-GCCcore-13.2.0|x|-|x|-|x|x|x|
 |scikit-build-core/0.5.0-GCCcore-12.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/extra/gent.yml b/mkdocs/extra/gent.yml
@@ -16,7 +16,7 @@ hpcname: hpcugent
 loginnode: login.hpc.ugent.be
 loginhost: gligar07.gastly.os
 altloginhost: gligar08.gastly.os
-modules_last_updated: Thu, 03 Oct 2024 at 15:44:20 CEST # This line is automatically updated by scripts/available_modules/available_modules.py
+modules_last_updated: Sat, 05 Oct 2024 at 15:44:20 CEST # This line is automatically updated by scripts/available_modules/available_modules.py
 # get these with ssh-keyscan gligar01.ugent.be > file
 # ssh-keygen -l -f file
 # ssh-keygen -l -f file -E md5