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Update Modules [7 November 2024, 15:43]
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Expand Up @@ -21,7 +21,7 @@ module load Boost/1.85.0-GCC-13.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Boost/1.85.0-GCC-13.3.0|x|x|x|x|-|x|-|
|Boost/1.85.0-GCC-13.3.0|x|x|x|x|-|x|x|
|Boost/1.83.0-GCC-13.2.0|x|x|x|x|x|x|x|
|Boost/1.82.0-GCC-12.3.0|x|x|x|x|x|x|x|
|Boost/1.81.0-GCC-12.2.0|x|x|x|x|-|x|-|
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Expand Up @@ -21,6 +21,6 @@ module load CapnProto/1.0.1-GCCcore-12.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|CapnProto/1.0.1-GCCcore-12.3.0|x|x|x|x|-|x|x|
|CapnProto/1.0.1-GCCcore-12.3.0|x|x|x|x|x|x|x|
|CapnProto/0.9.1-GCCcore-11.2.0|x|x|x|-|-|-|-|
|CapnProto/0.8.0-GCCcore-9.3.0|-|x|x|x|-|-|-|
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Expand Up @@ -21,7 +21,7 @@ module load Catch2/2.13.10-GCCcore-13.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Catch2/2.13.10-GCCcore-13.3.0|x|x|x|x|-|x|-|
|Catch2/2.13.10-GCCcore-13.3.0|x|x|x|x|-|x|x|
|Catch2/2.13.9-GCCcore-13.2.0|x|x|x|x|x|x|x|
|Catch2/2.13.9-GCCcore-12.3.0|x|x|x|x|x|x|x|
|Catch2/2.13.9-GCCcore-12.2.0|x|x|x|x|-|x|-|
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Expand Up @@ -21,7 +21,7 @@ module load Cython/3.0.10-GCCcore-13.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Cython/3.0.10-GCCcore-13.3.0|x|x|x|x|-|x|-|
|Cython/3.0.10-GCCcore-13.3.0|x|x|x|x|-|x|x|
|Cython/3.0.10-GCCcore-13.2.0|x|x|x|x|-|x|x|
|Cython/3.0.8-GCCcore-12.3.0|x|x|x|x|x|x|x|
|Cython/3.0.8-GCCcore-12.2.0|x|x|x|x|-|-|-|
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Expand Up @@ -21,7 +21,7 @@ module load DendroPy/4.6.1-GCCcore-12.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|DendroPy/4.6.1-GCCcore-12.3.0|x|x|x|x|-|x|x|
|DendroPy/4.6.1-GCCcore-12.3.0|x|x|x|x|x|x|x|
|DendroPy/4.5.2-GCCcore-11.3.0|x|x|x|x|-|x|-|
|DendroPy/4.5.2-GCCcore-11.2.0|x|x|x|-|-|-|-|
|DendroPy/4.5.2-GCCcore-10.2.0-Python-2.7.18|-|x|x|x|-|-|-|
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Expand Up @@ -21,7 +21,7 @@ module load Eigen/3.4.0-GCCcore-13.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Eigen/3.4.0-GCCcore-13.3.0|x|x|x|x|-|x|-|
|Eigen/3.4.0-GCCcore-13.3.0|x|x|x|x|-|x|x|
|Eigen/3.4.0-GCCcore-13.2.0|x|x|x|x|x|x|x|
|Eigen/3.4.0-GCCcore-12.3.0|x|x|x|x|x|x|x|
|Eigen/3.4.0-GCCcore-12.2.0|x|x|x|x|-|x|-|
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Expand Up @@ -22,7 +22,7 @@ module load FastTree/2.1.11-GCCcore-13.2.0
| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|FastTree/2.1.11-GCCcore-13.2.0|x|x|x|x|-|x|x|
|FastTree/2.1.11-GCCcore-12.3.0|x|x|x|x|-|x|x|
|FastTree/2.1.11-GCCcore-12.3.0|x|x|x|x|x|x|x|
|FastTree/2.1.11-GCCcore-11.3.0|x|x|x|x|-|-|-|
|FastTree/2.1.11-GCCcore-11.2.0|x|x|x|-|-|-|-|
|FastTree/2.1.11-GCCcore-10.2.0|-|x|x|x|-|-|-|
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which FlexiBLAS installations are available per HPC-UGe
To start using FlexiBLAS, load one of these modules using a `module load` command like:

```shell
module load FlexiBLAS/3.3.1-GCC-13.2.0
module load FlexiBLAS/3.4.4-GCC-13.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|FlexiBLAS/3.4.4-GCC-13.3.0|x|x|x|x|-|x|x|
|FlexiBLAS/3.3.1-GCC-13.2.0|x|x|x|x|x|x|x|
|FlexiBLAS/3.3.1-GCC-12.3.0|x|x|x|x|x|x|x|
|FlexiBLAS/3.2.1-GCC-12.2.0|x|x|x|x|-|-|-|
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which GTDB-Tk installations are available per HPC-UGent
To start using GTDB-Tk, load one of these modules using a `module load` command like:

```shell
module load GTDB-Tk/2.3.2-foss-2023a
module load GTDB-Tk/2.4.0-foss-2023a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|GTDB-Tk/2.4.0-foss-2023a|x|x|x|x|x|x|x|
|GTDB-Tk/2.3.2-foss-2023a|x|x|x|x|-|x|x|
|GTDB-Tk/2.0.0-intel-2021b|x|x|x|-|-|-|-|
|GTDB-Tk/1.7.0-intel-2020b|-|x|x|-|-|-|-|
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2 changes: 1 addition & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/ICU.md
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Expand Up @@ -21,7 +21,7 @@ module load ICU/75.1-GCCcore-13.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|ICU/75.1-GCCcore-13.3.0|x|x|x|x|-|x|-|
|ICU/75.1-GCCcore-13.3.0|x|x|x|x|-|x|x|
|ICU/74.1-GCCcore-13.2.0|x|x|x|x|x|x|x|
|ICU/73.2-GCCcore-12.3.0|x|x|x|x|x|x|x|
|ICU/72.1-GCCcore-12.2.0|x|x|x|x|-|x|-|
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Expand Up @@ -22,6 +22,6 @@ module load Mash/2.3-intel-compilers-2021.4.0
| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Mash/2.3-intel-compilers-2021.4.0|x|x|x|-|-|-|-|
|Mash/2.3-GCC-12.3.0|x|x|x|x|-|x|x|
|Mash/2.3-GCC-12.3.0|x|x|x|x|x|x|x|
|Mash/2.3-GCC-11.2.0|x|x|x|-|-|-|-|
|Mash/2.2-GCC-9.3.0|-|x|x|x|-|-|-|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/Nim.md
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Expand Up @@ -14,12 +14,13 @@ The overview below shows which Nim installations are available per HPC-UGent Tie
To start using Nim, load one of these modules using a `module load` command like:

```shell
module load Nim/1.6.6-GCCcore-11.2.0
module load Nim/2.2.0-GCCcore-12.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Nim/2.2.0-GCCcore-12.3.0|x|x|x|x|-|x|x|
|Nim/1.6.6-GCCcore-11.2.0|x|x|x|-|-|-|-|
|Nim/1.4.6-GCCcore-10.2.0|-|x|x|-|-|-|-|
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which OpenBLAS installations are available per HPC-UGen
To start using OpenBLAS, load one of these modules using a `module load` command like:

```shell
module load OpenBLAS/0.3.24-GCC-13.2.0
module load OpenBLAS/0.3.27-GCC-13.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|OpenBLAS/0.3.27-GCC-13.3.0|x|x|x|x|-|x|x|
|OpenBLAS/0.3.24-GCC-13.2.0|x|x|x|x|x|x|x|
|OpenBLAS/0.3.23-GCC-12.3.0|x|x|x|x|x|x|x|
|OpenBLAS/0.3.21-GCC-12.2.0|x|x|x|x|-|-|-|
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Expand Up @@ -22,4 +22,4 @@ module load Porechop/0.2.4-intel-2019b-Python-3.7.4
| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Porechop/0.2.4-intel-2019b-Python-3.7.4|-|x|x|-|-|-|-|
|Porechop/0.2.4-20240119-GCCcore-12.3.0|-|x|x|-|-|x|x|
|Porechop/0.2.4-20240119-GCCcore-12.3.0|x|x|x|x|-|x|x|
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which SciPy-bundle installations are available per HPC-
To start using SciPy-bundle, load one of these modules using a `module load` command like:

```shell
module load SciPy-bundle/2023.11-gfbf-2023b
module load SciPy-bundle/2024.05-gfbf-2024a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|SciPy-bundle/2024.05-gfbf-2024a|x|x|x|x|-|x|-|
|SciPy-bundle/2023.11-gfbf-2023b|x|x|x|x|x|x|x|
|SciPy-bundle/2023.07-iimkl-2023a|-|-|-|-|x|-|-|
|SciPy-bundle/2023.07-gfbf-2023a|x|x|x|x|x|x|x|
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Expand Up @@ -14,12 +14,13 @@ The overview below shows which Stacks installations are available per HPC-UGent
To start using Stacks, load one of these modules using a `module load` command like:

```shell
module load Stacks/2.53-iccifort-2019.5.281
module load Stacks/2.68-foss-2023a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Stacks/2.68-foss-2023a|x|x|x|x|-|x|x|
|Stacks/2.53-iccifort-2019.5.281|-|x|x|-|-|-|-|
|Stacks/2.5-iccifort-2019.5.281|-|x|x|-|-|-|-|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/gfbf.md
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which gfbf installations are available per HPC-UGent Ti
To start using gfbf, load one of these modules using a `module load` command like:

```shell
module load gfbf/2023b
module load gfbf/2024a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|gfbf/2024a|x|x|x|x|-|x|x|
|gfbf/2023b|x|x|x|x|x|x|x|
|gfbf/2023a|x|x|x|x|x|x|x|
|gfbf/2022b|x|x|x|x|-|-|-|
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Expand Up @@ -21,7 +21,7 @@ module load gzip/1.13-GCCcore-13.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|gzip/1.13-GCCcore-13.3.0|x|x|x|x|-|x|-|
|gzip/1.13-GCCcore-13.3.0|x|x|x|x|-|x|x|
|gzip/1.13-GCCcore-13.2.0|x|x|x|x|x|x|x|
|gzip/1.12-GCCcore-12.3.0|x|x|x|x|x|x|x|
|gzip/1.12-GCCcore-12.2.0|x|x|x|x|-|x|-|
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Expand Up @@ -21,7 +21,7 @@ module load hypothesis/6.103.1-GCCcore-13.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|hypothesis/6.103.1-GCCcore-13.3.0|x|x|x|x|-|x|-|
|hypothesis/6.103.1-GCCcore-13.3.0|x|x|x|x|-|x|x|
|hypothesis/6.90.0-GCCcore-13.2.0|x|x|x|x|x|x|x|
|hypothesis/6.82.0-GCCcore-12.3.0|x|x|x|x|x|x|x|
|hypothesis/6.68.2-GCCcore-12.2.0|x|x|x|x|-|x|-|
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2 changes: 1 addition & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/lz4.md
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Expand Up @@ -21,7 +21,7 @@ module load lz4/1.9.4-GCCcore-13.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|lz4/1.9.4-GCCcore-13.3.0|x|x|x|x|-|x|-|
|lz4/1.9.4-GCCcore-13.3.0|x|x|x|x|-|x|x|
|lz4/1.9.4-GCCcore-13.2.0|x|x|x|x|x|x|x|
|lz4/1.9.4-GCCcore-12.3.0|x|x|x|x|x|x|x|
|lz4/1.9.4-GCCcore-12.2.0|x|x|x|x|-|x|-|
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Expand Up @@ -21,7 +21,7 @@ module load meson-python/0.16.0-GCCcore-13.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|meson-python/0.16.0-GCCcore-13.3.0|x|x|x|x|-|x|-|
|meson-python/0.16.0-GCCcore-13.3.0|x|x|x|x|-|x|x|
|meson-python/0.15.0-GCCcore-13.2.0|x|x|x|x|x|x|x|
|meson-python/0.13.2-GCCcore-12.3.0|x|x|x|x|x|x|x|
|meson-python/0.11.0-GCCcore-12.2.0|x|x|x|x|-|x|-|
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Expand Up @@ -14,11 +14,12 @@ The overview below shows which mosdepth installations are available per HPC-UGen
To start using mosdepth, load one of these modules using a `module load` command like:

```shell
module load mosdepth/0.3.3-GCC-11.2.0
module load mosdepth/0.3.9-GCC-12.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|mosdepth/0.3.9-GCC-12.3.0|x|x|x|x|-|x|x|
|mosdepth/0.3.3-GCC-11.2.0|x|x|x|-|-|-|-|
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Expand Up @@ -21,4 +21,4 @@ module load pplacer/1.1.alpha19

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|pplacer/1.1.alpha19|x|x|x|x|-|x|x|
|pplacer/1.1.alpha19|x|x|x|x|x|x|x|
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Expand Up @@ -21,7 +21,7 @@ module load prodigal/2.6.3-GCCcore-12.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|prodigal/2.6.3-GCCcore-12.3.0|x|x|x|x|-|x|x|
|prodigal/2.6.3-GCCcore-12.3.0|x|x|x|x|x|x|x|
|prodigal/2.6.3-GCCcore-12.2.0|x|x|x|x|-|x|-|
|prodigal/2.6.3-GCCcore-11.3.0|x|x|x|x|-|x|-|
|prodigal/2.6.3-GCCcore-11.2.0|x|x|x|x|-|-|-|
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Expand Up @@ -21,7 +21,7 @@ module load pybind11/2.12.0-GCC-13.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|pybind11/2.12.0-GCC-13.3.0|x|x|x|x|-|x|-|
|pybind11/2.12.0-GCC-13.3.0|x|x|x|x|-|x|x|
|pybind11/2.11.1-GCCcore-13.2.0|x|x|x|x|x|x|x|
|pybind11/2.11.1-GCCcore-12.3.0|x|x|x|x|x|x|x|
|pybind11/2.10.3-GCCcore-12.2.0|x|x|x|x|-|x|-|
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Expand Up @@ -25,5 +25,5 @@ module load pydantic/2.7.4-GCCcore-13.2.0
|pydantic/2.6.4-GCCcore-13.2.0|x|x|x|x|-|-|x|
|pydantic/2.5.3-GCCcore-12.3.0|x|x|x|x|x|x|x|
|pydantic/2.5.3-GCCcore-12.2.0|x|x|x|x|-|-|-|
|pydantic/1.10.13-GCCcore-12.3.0|x|x|x|x|-|x|x|
|pydantic/1.10.13-GCCcore-12.3.0|x|x|x|x|x|x|x|
|pydantic/1.10.4-GCCcore-11.3.0|x|x|x|x|-|-|-|
24 changes: 24 additions & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/skani.md
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@@ -0,0 +1,24 @@
---
hide:
- toc
---

skani
=====

# Available modules


The overview below shows which skani installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).

To start using skani, load one of these modules using a `module load` command like:

```shell
module load skani/0.2.2-GCCcore-12.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|skani/0.2.2-GCCcore-12.3.0|x|x|x|x|x|x|x|
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Expand Up @@ -21,7 +21,7 @@ module load zstd/1.5.6-GCCcore-13.3.0

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|zstd/1.5.6-GCCcore-13.3.0|x|x|x|x|-|x|-|
|zstd/1.5.6-GCCcore-13.3.0|x|x|x|x|-|x|x|
|zstd/1.5.5-GCCcore-13.2.0|x|x|x|x|x|x|x|
|zstd/1.5.5-GCCcore-12.3.0|x|x|x|x|x|x|x|
|zstd/1.5.2-GCCcore-12.2.0|x|x|x|x|-|x|-|
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2 changes: 1 addition & 1 deletion mkdocs/extra/gent.yml
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Expand Up @@ -16,7 +16,7 @@ hpcname: hpcugent
loginnode: login.hpc.ugent.be
loginhost: gligar07.gastly.os
altloginhost: gligar08.gastly.os
modules_last_updated: Wed, 06 Nov 2024 at 15:45:02 CET # This line is automatically updated by scripts/available_modules/available_modules.py
modules_last_updated: Thu, 07 Nov 2024 at 15:44:46 CET # This line is automatically updated by scripts/available_modules/available_modules.py
# get these with ssh-keyscan gligar01.ugent.be > file
# ssh-keygen -l -f file
# ssh-keygen -l -f file -E md5
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