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Example added for searching using higlass-python #139

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merged 4 commits into from
Nov 21, 2023
Merged

Example added for searching using higlass-python #139

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04e93c4
Example added for searching using higlass-python
smitkadvani Oct 17, 2023
a9e9a1b
Syntax updated
smitkadvani Oct 17, 2023
ccc8f16
Update getting_started.rst
smitkadvani Oct 17, 2023
be567c1
Update getting_started.rst - typo corrected
smitkadvani Nov 21, 2023
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38 changes: 38 additions & 0 deletions docs/getting_started.rst
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Original file line number Diff line number Diff line change
Expand Up @@ -182,6 +182,44 @@ or loading an existing view config via URL to access a sub-track:
# }




Add Genome Position SearchBox
-------------------



.. code-block:: python

import higlass as hg

mm10 = hg.remote(
uid="QDutvmyiSrec5nX4pA5WGQ",
server="//higlass.io/api/v1",
)

view1 = hg.view(

mm10.track("gene-annotations",height=150).opts(
minHeight = 24,
),
genomePositionSearchBox = hg.GenomePositionSearchBox(
autocompleteServer="//higlass.io/api/v1",
autocompleteId="OHJakQICQD6gTD7skx4EWA",
chromInfoId="hg19",
chromInfoServer="//higlass.io/api/v1",
visible=True)
)

#In order to get access to track sources from higlass.io data sources
list_of_track_source_servers = [
"//higlass.io/api/v1",
"https://resgen.io/api/v1/gt/paper-data"
]

view1.viewconf(trackSourceServers = list_of_track_source_servers, exportViewUrl = "/api/v1/viewconfs")


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