move setup to setup.cfg

README.md

@@ -62,9 +62,16 @@ A Graph object stores a heterogeneous network and relies on the following classe
 3. Edge
 4. MetaEdge
 
-## Release instructions
+## Development
 
-This section is only relevant for project maintainers.
+This repo uses pre-commit:
+
+```sh
+# run once per local repo before committing
+pre-commit install
+```
+
+This following is only relevant for maintainers.
 Create a new release at <https://github.com/hetio/hetnetpy/releases/new>.
 GitHub Actions will build the distribution and upload it to PyPI.
 The version information inferred from the Git tag using [setuptools_scm](https://github.com/pypa/setuptools_scm/).

setup.cfg

@@ -1,3 +1,61 @@
+[metadata]
+name = hetnetpy
+maintainer = Daniel Himmelstein
+maintainer_email = [email protected]
+license = CC0 1.0
+license_file = LICENSE-CC0.md
+description = Hetnets in Python
+long_description = file: README.md
+long_description_content_type = text/markdown; charset=UTF-8
+url = https://github.com/hetio/hetnetpy
+classifiers =
+ Intended Audience :: Science/Research
+ Topic :: Scientific/Engineering :: Bio-Informatics
+ Topic :: Scientific/Engineering :: Information Analysis
+ License :: CC0 1.0 Universal (CC0 1.0) Public Domain Dedication
+ Programming Language :: Python :: 3 :: Only
+keywords =
+ hetnet
+ graph
+ heterogeneous
+ network
+ neo4j
+ hetio
+ hetnetpy
+ dwpc
+ rephetio
+
+[options]
+packages = find:
+python_requires = >=3.6
+install_requires =
+ regex
+
+[options.extras_require]
+test =
+ neo4j
+ numpy
+ pandas
+ py2neo
+ pytest
+ scipy
+ tqdm
+stats =
+ pandas
+ matplotlib
+ seaborn
+neo4j =
+ pandas
+ py2neo
+ tqdm
+matrix =
+ numpy
+ scipy
+
+[options.packages.find]
+exclude =
+ test
+
 [flake8]
 ignore =
  E203

setup.py

@@ -1,64 +1,4 @@
-import pathlib
-
 import setuptools
 
-directory = pathlib.Path(__file__).parent.absolute()
-
-# long_description
-readme_path = directory.joinpath("README.md")
-with readme_path.open() as read_file:
- long_description = read_file.read()
-
-# Testing dependencies
-tests_require = [
- "black ; python_version>='3.6'",
- "neo4j",
- "numpy",
- "pandas",
- "py2neo",
- "pytest",
- "scipy",
- "tqdm",
-]
-
-setuptools.setup(
- # Package details
- name="hetnetpy",
- url="https://github.com/hetio/hetnetpy",
- description="Hetnets in Python",
- long_description_content_type="text/markdown",
- long_description=long_description,
- license="CC0 1.0",
- # Author details
- author="Daniel Himmelstein",
- author_email="[email protected]",
- # Package topics
- keywords="hetnet graph heterogeneous network neo4j hetio hetnetpy",
- classifiers=[
- "Intended Audience :: Science/Research",
- "Topic :: Scientific/Engineering :: Bio-Informatics",
- "Topic :: Scientific/Engineering :: Information Analysis",
- "License :: CC0 1.0 Universal (CC0 1.0) Public Domain Dedication",
- "Programming Language :: Python :: 3",
- "Programming Language :: Python :: 3 :: Only",
- "Programming Language :: Python :: 3.6",
- "Programming Language :: Python :: 3.7",
- "Programming Language :: Python :: 3.8",
- "Programming Language :: Python :: 3.9",
- ],
- # should find hetnetpy (and hetio if symlink supported)
- packages=setuptools.find_packages(exclude=["test"]),
- # Specify python version
- python_requires=">=3.6",
- # Run-time dependencies
- install_requires=["regex"],
- # Testing dependencies
- tests_require=tests_require,
- # Additional groups of dependencies
- extras_require={
- "stats": ["pandas", "matplotlib", "seaborn"],
- "neo4j": ["pandas", "py2neo", "tqdm"],
- "matrix": ["numpy", "scipy"],
- "test": tests_require,
- },
-)
+if __name__ == "__main__":
+ setuptools.setup()