add ecosystem page

CONTRIBUTING.md

@@ -10,7 +10,7 @@ Any contribution is appreciated. Here we summarize how your can help.
 
 ## Tools and applications
 
-List of supporting tools can be found on [implemented](implemented) page.
+List of supporting tools can be found on [ecosystem](ecosystem) page.
 
 - Use **Issues** and **Pull requests** in the particular repository.
 - Let us know if the Heta project helps you to develop model or tool.

README.md

@@ -2,6 +2,11 @@
 
 *An open-source initiative developing advanced tools and best practices for dynamic system modeling in pharmacology, PK/PD, QSP, and systems biology.*
 
+- **About**
+- [Ecosystem](ecosystem.md)
+- [Version compatibility](compatibility.md)
+- [Contributing](CONTRIBUTING.md)
+
 ---
 
 ## Empowering Modelers in Pharmacology and Systems Biology
@@ -14,7 +19,7 @@ The **Heta Project** is an open-source initiative dedicated to transforming the
 
 - **Unified Data Structures:** Store model components, datasets, and tasks in a consistent format.
 - **Domain-Specific Language:** Utilize the [Heta language](/specifications/), a DSL tailored for dynamic quantitative models.
-- **Open-Source Tools and Resources:** Access [tools](implemented?id=Heta-supporting-tools), [examples](implemented?id=Open-source-QSP-platforms), and [study materials](resources/).
+- **Open-Source Tools and Resources:** Access [tools](ecosystem?id=Heta-supporting-tools), [examples](ecosystem?id=Open-source-QSP-platforms), and [study materials](resources/).
 - **Best Practices and Workflows:** Follow established methodologies for efficient model development.
 
 ---

_sidebar.md

@@ -1,5 +1,4 @@
 * [About](/)
-* [Contributing](CONTRIBUTING.md)
+* [Ecosystem](ecosystem.md)
 * [Version compatibility](compatibility.md)
-* [Implemented](implemented.md)
-* [Recommended software](software.md)
+* [Contributing](CONTRIBUTING.md)

implemented.md → ecosystem.md

@@ -1,4 +1,31 @@
-# Implemented
+# Ecosystem
+
+## Heta supporting tools
+
+- Julia package for simulation of large scale QSP models supporting Heta syntax: [HetaSimulator.jl](https://github.com/hetalang/HetaSimulator.jl) [![version](https://juliahub.com/docs/HetaSimulator/version.svg)](https://juliahub.com/ui/Packages/HetaSimulator/IIE0h)
+- Command line tool compiling Heta and JS package: [heta-compiler](https://github.com/hetalang/heta-compiler) [![npm](https://img.shields.io/npm/v/heta-compiler)](https://www.npmjs.com/package/heta-compiler)
+- Syntax highlighting for VSCode: [heta-highlight-vscode](https://github.com/hetalang/heta-highlight-vscode) [![Visual Studio Marketplace Version](https://img.shields.io/visual-studio-marketplace/v/insysbio.heta-highlight-vscode?label=VSMarket)](https://marketplace.visualstudio.com/items?itemName=insysbio.heta-highlight-vscode)
+- Syntax highlighting for Sublime text: [heta-highlight-sublime](https://github.com/hetalang/heta-highlight-sublime) [![GitHub tag (with filter)](https://img.shields.io/github/v/tag/hetalang/heta-highlight-sublime)](https://packagecontrol.io/packages/heta)
+- Parsing of Heta language code in JavaScript: [heta-parser](https://github.com/hetalang/heta-parser) [![npm](https://img.shields.io/npm/v/heta-parser)](https://www.npmjs.com/package/heta-parser)
+
+## Web applications
+
+Heta syntax and Heta infrastructure were utilized for the development of web-based tools.
+
+- [Heta API](https://heta-api.insysbio.com/)
+    A public API for Heta language compilation.
+- [Heta compiler online](https://heta-online.insysbio.com/)
+    Web based compiler and editor of Heta code.
+- [SbmlViewer](https://sv.insysbio.com/)
+    A tool for fast and easy reading of biological models written in SBML format. It allows you to open SBML in any browser.
+- [Immune Response Template](https://irt.insysbio.com)
+    A Quantitative Systems Pharmacology (QSP) platform of immune system and tool for development of QSP and mechanistic models related to immune response.
+- [mAb-app](https://shiny.insysbio.com/mAb-app/)
+    PK/RO simulator for anti-PD-1 monoclonal Antibodies (Shiny app)
+- [ery](https://shiny.insysbio.com/ery/)
+    PK/PD simulator for Erythropoiesis-Stimulating Agents (Shiny app)
+- [sbml-mrgsolve-case](https://shiny.insysbio.com/sbml-mrgsolve-case/)
+    An RMarkdown example demonstrating format conversion from SBML into mrgsolve
 
 ## Open source QSP platforms
 
@@ -23,27 +50,32 @@ The examples of Heta-based QSP platforms with CI/CD capabilities are shared on G
 
 The Heta language and Heta-based QSP framework were used in several “real world” projects for the development of middle-scale and large-scale models.
 
-## Heta supporting tools
+## Recommended Software for Working with Heta Models
 
-- Julia package for simulation of large scale QSP models supporting Heta syntax: [HetaSimulator.jl](https://github.com/hetalang/HetaSimulator.jl) [![version](https://juliahub.com/docs/HetaSimulator/version.svg)](https://juliahub.com/ui/Packages/HetaSimulator/IIE0h)
-- JavaScript framework and command line tool supporting Heta modules: [heta-compiler](https://github.com/hetalang/heta-compiler) [![npm](https://img.shields.io/npm/v/heta-compiler)](https://www.npmjs.com/package/heta-compiler)
-- Syntax highlighting for VSCode: [heta-highlight-vscode](https://github.com/hetalang/heta-highlight-vscode) [![Visual Studio Marketplace Version](https://img.shields.io/visual-studio-marketplace/v/insysbio.heta-highlight-vscode?label=VSMarket)](https://marketplace.visualstudio.com/items?itemName=insysbio.heta-highlight-vscode)
-- Syntax highlighting for Sublime text: [heta-highlight-sublime](https://github.com/hetalang/heta-highlight-sublime) [![GitHub tag (with filter)](https://img.shields.io/github/v/tag/hetalang/heta-highlight-sublime)](https://packagecontrol.io/packages/heta)
-- Parsing of Heta language code in JavaScript: [heta-parser](https://github.com/hetalang/heta-parser) [![npm](https://img.shields.io/npm/v/heta-parser)](https://www.npmjs.com/package/heta-parser)
+To get started with Heta-based platforms, we recommend installing a minimal set of tools for full functionality. This setup ensures an efficient workflow, especially for medium- to large-scale QSP platforms. Usage of an Integrated Development Environment (IDE) is optional but highly beneficial.
 
-## Web applications
+For a guided introduction, check out the Heta tutorial's [Lesson #1](https://youtu.be/aIpo9Yksyb8).
 
-Heta syntax and Heta infrastructure were utilized for the development of web-based tools.
+### Minimal Recommended Setup
 
-- [Heta compiler online](https://heta-online.insysbio.com/)
-    Web based compiler and editor of Heta code.
-- [SbmlViewer](https://sv.insysbio.com/)
-    A tool for fast and easy reading of biological models written in SBML format. It allows you to open SBML in any browser.
-- [Immune Response Template](https://irt.insysbio.com)
-    A Quantitative Systems Pharmacology (QSP) platform of immune system and tool for development of QSP and mechanistic models related to immune response.
-- [mAb-app](https://shiny.insysbio.com/mAb-app/)
-    PK/RO simulator for anti-PD-1 monoclonal Antibodies (Shiny app)
-- [ery](https://shiny.insysbio.com/ery/)
-    PK/PD simulator for Erythropoiesis-Stimulating Agents (Shiny app)
-- [sbml-mrgsolve-case](https://shiny.insysbio.com/sbml-mrgsolve-case/)
-    An RMarkdown example demonstrating format conversion from SBML into mrgsolve
+1. **VSCode**  
+   - Download and Install: [https://code.visualstudio.com/](https://code.visualstudio.com/)  
+   - Install with extensions manager: [Heta Highlight Plugin](https://marketplace.visualstudio.com/items?itemName=heta-highlight)
+
+2. **heta-compiler**  
+   - Installation Guide: [https://hetalang.github.io/#/heta-compiler/?id=installation](https://hetalang.github.io/#/heta-compiler/?id=installation)
+
+3. **HetaSimulator**
+    - Install Julia: [https://julialang.org/downloads/](https://julialang.org/downloads/)
+    - Install the package: [https://hetalang.github.io/#/HetaSimulator.jl/](https://hetalang.github.io/#/HetaSimulator.jl/)
+
+4. **Git** *(optional)*  
+   - Download: [https://git-scm.com/](https://git-scm.com/)  
+   - Provides Bash console and Git synchronization for version control.
+
+### Alternative Configuration
+
+If you prefer, you can use **Sublime Text** instead of VSCode:  
+- Download and install: [https://www.sublimetext.com/download](https://www.sublimetext.com/download)  
+- Install the **Heta highlighter plugin** via:  
+  - Open `Package Control` > `Install Package` > Search for `Heta`.