minor docs fixes

README.md

@@ -30,10 +30,11 @@ To install or update HetaSimulator and heta-compiler run the code below in Julia
 
 ```julia
 julia> ]
-(@v1.10) pkg> add HetaSimulator
+pkg> add HetaSimulator
 ```
-
-Internally HetaSimulator installs Heta compiler as an artifact. 
+Notes:
+ - Internally HetaSimulator installs Heta compiler as an artifact. 
+ - In some MacOS versions, the installation of the package may require Rosetta, use `softwareupdate --install-rosetta` in terminal.
 
 ## Basic usage
 

cases/story_1/run.jl

@@ -67,7 +67,8 @@ scn3 = Scenario(
 sim(scn3) |> plot
 
 ### sim sequentially 
-sim.([scn1, scn2, scn3]) .|> plot
+sim.([scn1, scn2, scn3]) .|> plot .|> display
+
 ### sim together
 sim([scn1, scn2, scn3]) |> plot
 sim([:x => scn1, :y=>scn2, :z=>scn3]) |> plot
@@ -77,17 +78,17 @@ x=sim([:x => scn1, :y=>scn2, :z=>scn3]; parameters=[:k1=>0.1]) |> plot
 #measurements_csv = read_measurements("$HetaSimulatorDir/cases/story_1/measurements.csv")
 measurements_csv = read_measurements("$HetaSimulatorDir/cases/story_1/measurements_no_scope.csv")
 measurements_xlsx = read_measurements("$HetaSimulatorDir/cases/story_1/measurements.xlsx")
-scn4 = Scenario(model, (0,250); parameters = [:k2=>0.001, :k3=>0.04], saveat = [0.0, 50., 150., 250.]);
+scn4 = Scenario(model, (0,250); parameters = [:k2=>0.001, :k3=>0.04]);
 add_measurements!(scn4, measurements_csv; subset = [:scenario => :dataone])
 
 ### fit many scenarios
 estim = estimator(
     [:x=>scn2, :y=>scn3, :z=>scn4],
     [:k1=>0.1,:k2=>0.2,:k3=>0.3]
 )
-estim([0.01, 0.02, 0.35])
-res1 = fit([:x=>scn2, :y=>scn3, :z=>scn4], [:k1=>0.1,:k2=>0.2,:k3=>0.3])
-res2 = fit([scn2, scn3, scn4], [:k1=>0.1,:k2=>0.2,:k3=>0.3])
+estim([0.01, 0.02, 0.35]) # 172.18
+res1 = fit([:x=>scn2, :y=>scn3, :z=>scn4], [:k1=>0.1,:k2=>0.2,:k3=>0.3]) # 51.59
+res2 = fit([scn2, scn3, scn4], [:k1=>0.1,:k2=>0.2,:k3=>0.3]) # 51.59
 sim(scn4, parameters = optim(res2)) |> plot
 
 # sim all scenarios
@@ -163,7 +164,7 @@ timepoint_meancov(mcsim1,80.,150.)
 timestep_meancor(mcsim1,2,3)
 timepoint_meancor(mcsim1,80.,150.)
 
-# !!!quantile
+# quantile
 timestep_quantile(mcsim1,0.95,2)
 timepoint_quantile(mcsim1,0.95,80.)
 

src/heta_cli/heta.jl

@@ -78,13 +78,13 @@ end
       meta_dir::String = "meta",
       source::String = "index.heta",
       type::String = "heta"
-      export::String = nothing
+      export_::String = nothing
     )
 
 Builds the models from Heta-based platform
 
-See `heta comiler` docs for details:
-https://hetalang.github.io/#/heta-compiler/cli-references?id=running-build-with-cli-options
+See `heta compiler` docs for details:
+<https://hetalang.github.io/#/heta-compiler/cli-references?id=running-build-with-cli-options>
 
 Arguments:
 
@@ -97,7 +97,7 @@ Arguments:
 - `meta_dir` : meta directory path. Default is `"meta"`
 - `source` : path to the main heta module. Default is `"index.heta"`
 - `type` : type of the source file. Default is `"heta"`
-- `export` : export the model to the specified format: `Julia,JSON`, `{format:SBML,version:L3V1},JSON`
+- `export_` : export the model to the specified format: `Julia,JSON`, `{format:SBML,version:L3V1},JSON`
 """
 function heta_build(
   target_dir::AbstractString;