Rti merge (#29)

* tranql upgrade python/docker py to 3.10

* Update server.py to py3.10 yaml

* Update tranql to redis-stack and add dev-conf and dev-schema files

* Make conf.yml file configurable and add to README

* Update requirements

* updated docker compose to handle some errors with writing to redis and passing all values to tranql through env

* fixing error produced by missing conf in tranql api call

* fix uvicorn vulnerability issues related to Plater

* remove all 'biolink:' additions in code

* upgrade plater version to fix biolink issue

* plater biolink changes

* Tranql works with new biolink data model

* updated Plater to new version

* fixed plater version

* bump version

* force update fix, and flasgger version bump

* bump old versions

* more vul fixes, and version updates

* down to zero vul

* change plater version

---------

Co-authored-by: Nathan Braswell <[email protected]>
Co-authored-by: esurface <[email protected]>
Co-authored-by: braswent <[email protected]>

requirements.txt

@@ -14,7 +14,7 @@ linkml-dataops==0.1.0
 linkml-runtime==1.3.2
 MarkupSafe==2.1.1
 openapi==1.1.0
-git+https://github.com/RTIInternational/Plater.git@v0.0.4
+git+https://github.com/helxplatform/Plater.git@v3.0.0
 git+https://github.com/TranslatorSRI/[email protected]#egg=reasoner-pydantic
 git+https://github.com/TranslatorSRI/[email protected]#egg=reasoner-converter
 reasoner-transpiler==1.7.1